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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:63.4 nTPM
HPA Brain:101.4 nTPM
GTEx:63.4 nTPM
FANTOM5:111.4 Scaled Tags Per Million
Pig:99.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

101.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 91.6
2194 Female, age 79, both hemispheres 107.6
2816 Male, age 47, midline 106.4
1981 Female, age 72, midline 86.0
2565 Male, age 75, midline 82.3
2048 Male, age 55, midline 75.9
Cervical spinal cord, dorsal horn
nTPM: 94.3
2296 Male, age 66, both hemispheres 148.7
2173 Female, age 72, unknown 117.4
2721 Male, age 90, both hemispheres 79.9
2069 Male, age 47, both hemispheres 76.6
1877 Male, age 55, unknown 75.2
2297 Male, age 75, both hemispheres 68.0
Cervical spinal cord, ventral horn
nTPM: 101.4
2820 Female, age 79, both hemispheres 137.5
2068 Male, age 55, unknown 116.8
2480 Male, age 75, both hemispheres 102.8
2295 Male, age 66, both hemispheres 85.2
2809 Male, age 90, both hemispheres 84.5
2098 Female, age 72, unknown 81.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

63.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 63.4
Samples: 204

Max nTPM: 144.7
Min nTPM: 23.9
Std nTPM: 21.2
Median nTPM: 61.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 144.7
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 129.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 115.7
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 115.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 113.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 113.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 110.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 103.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 102.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 101.7
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 100.6
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 97.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 96.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 96.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 96.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 95.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 95.3
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 94.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 94.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 94.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 94.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 93.4
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 92.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 91.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 90.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 88.8
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 88.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 86.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 85.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 85.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 85.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 84.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 84.2
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 84.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 84.0
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 83.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 80.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 80.0
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 79.4
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 79.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 78.4
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 77.6
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 76.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 76.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 76.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 76.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 76.3
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 76.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 76.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 75.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 75.5
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 75.5
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 75.3
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 74.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 74.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 74.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 74.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 74.0
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 74.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 73.7
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 73.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 73.4
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 72.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 72.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 72.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 72.1
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 72.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 71.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 70.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 70.8
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 70.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 70.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 70.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 69.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 69.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 69.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 68.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 68.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 68.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 68.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 67.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 67.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 66.3
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 65.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 65.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 65.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 65.1
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 64.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 64.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 64.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 64.1
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 64.1
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 64.0
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 63.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 63.7
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 63.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 63.3
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 63.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 62.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 62.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 62.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 61.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 61.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 60.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 60.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 60.1
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 59.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 59.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 59.2
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 59.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 59.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 59.0
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 58.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 58.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 58.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 58.2
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 57.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 57.8
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 57.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 57.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 56.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 55.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 55.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 55.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 55.4
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 55.2
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 55.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 54.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 54.6
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 54.3
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 54.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 53.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 53.8
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 53.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 53.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 53.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 52.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 52.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 51.9
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 51.5
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 51.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 50.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 50.7
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 50.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 49.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 49.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 49.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 48.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 48.7
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 48.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 47.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 47.5
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 47.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 46.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 46.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 46.6
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 46.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 46.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 45.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 45.2
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 45.2
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 44.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 44.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 44.3
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 44.3
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 43.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 43.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 43.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 43.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 43.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 43.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 43.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 42.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 42.5
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 42.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 42.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 41.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 41.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 40.8
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 40.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 39.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 39.0
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 38.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 38.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 38.0
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 37.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 36.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 35.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 35.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 35.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 34.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 34.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 33.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 33.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 32.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 31.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 30.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 30.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 29.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 28.3
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 26.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 25.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 24.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 23.9
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

111.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 111.4
FF:10181-103D1 60 years, female 129.3
FF:10159-103A6 76 years, female 93.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

99.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 52.5
Samples: 4

Max nTPM: 70.7
Min nTPM: 35.0
Sample A Female 70.7
Sample B Female 45.5
Sample C Male 35.0
Sample D Male 58.6
Ventral spinal cord
nTPM: 99.3
Samples: 4

Max nTPM: 128.1
Min nTPM: 71.6
Sample A Female 128.1
Sample B Female 94.1
Sample C Male 103.3
Sample D Male 71.6

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