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NKX2-1
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  • TISSUE

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  • NKX2-1
BRAIN HYPOTHALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Hypothalamus
Brain methods
HYPOTHALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:7.7 nTPM
HPA Brain:38.8 nTPM
GTEx:7.7 nTPM
Pig:13.6 nTPM
Mouse:10.2 nTPM
Allen mouse:20.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

HYPOTHALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

38.8
Sample id Sample description nTPM
Arcuate nucleus
nTPM: 23.3
1961 Female, age 42, unknown 34.8
2226 Male, age 75, left hemisphere 11.8
Dorsomedial nucleus
nTPM: 7.5
2041 Female, age 72, unknown 18.1
2017 Female, age 42, unknown 4.0
1989 Male, age 62, unknown 0.5
Lateral hypothalamic area
nTPM: 7.6
2412 Male, age 62, unknown 16.7
1791 Male, age 80, right hemisphere 6.2
2271 Male, age 75, both hemispheres 5.3
2228 Male, age 66, unknown 2.3
Mammillary body
nTPM: 20.7
1923 Female, age 72, unknown 38.4
1948 Female, age 72, unknown 22.2
1834 Female, age 42, unknown 21.0
2413 Male, age 66, unknown 21.0
1945 Male, age 80, right hemisphere 1.1
Paraventricular nucleus
nTPM: 3.4
2700 Male, age 62, unknown 3.4
Preoptic area
nTPM: 8.6
1861 Female, age 42, unknown 12.0
1907 Male, age 80, right hemisphere 9.9
2414 Female, age 72, unknown 3.9
Supraoptic nucleus
nTPM: 2.4
1894 Female, age 72, unknown 3.0
2835 Female, age 72, unknown 2.9
2043 Male, age 62, unknown 1.4
Ventromedial nucleus
nTPM: 38.8
1982 Female, age 72, unknown 44.6
1822 Female, age 42, unknown 32.9

HYPOTHALAMUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

7.7
GTEx sample id Sample description nTPM
Brain - Hypothalamus
Average nTPM: 7.7
Samples: 257

Max nTPM: 26.4
Min nTPM: 0.0
Std nTPM: 6.1
Median nTPM: 6.0
GTEX-1H1CY-0011-R8b-SM-CJI31 60-69 years, female 26.4
GTEX-111FC-0011-R8b-SM-GI4VS 60-69 years, male 25.0
GTEX-15ER7-0011-R8a-SM-7KUL2 20-29 years, female 24.9
GTEX-ZUA1-0011-R8b-SM-51MST 40-49 years, male 24.9
GTEX-1P4AB-0011-R8a-SM-F341R 50-59 years, male 23.2
GTEX-13FXS-0011-R8a-SM-5J1MN 50-59 years, male 22.8
GTEX-1F6IF-0011-R8a-SM-9OSX5 60-69 years, male 22.3
GTEX-1C6VR-0011-R8b-SM-7MXUF 60-69 years, male 21.9
GTEX-17HII-0011-R8a-SM-79OK6 50-59 years, male 20.9
GTEX-1NV8Z-0011-R8b-SM-F3K3J 60-69 years, male 20.4
GTEX-1MCQQ-0011-R8b-SM-F341H 60-69 years, male 20.2
GTEX-11DXW-0011-R8a-SM-GIN8T 40-49 years, male 20.1
GTEX-1N2EE-0011-R8a-SM-F3K4X 60-69 years, male 20.0
GTEX-1I1GQ-0011-R8a-SM-C1YRS 50-59 years, male 19.7
GTEX-13CIG-0011-R8b-SM-5LZX5 50-59 years, male 18.7
GTEX-14ASI-0011-R8b-SM-5S2UB 60-69 years, male 18.0
GTEX-11ZTS-0011-R8a-SM-57WDI 60-69 years, female 17.5
GTEX-1JMLX-0011-R8a-SM-G9EPQ 50-59 years, male 17.4
GTEX-1F88E-0011-R8a-SM-CJI2H 60-69 years, female 16.9
GTEX-1A8G7-0011-R8a-SM-7P8S6 60-69 years, male 16.7
GTEX-1GF9V-0011-R8b-SM-CE6RB 60-69 years, male 16.5
GTEX-13NZA-0011-R8b-SM-5KM2Q 60-69 years, male 16.3
GTEX-13OW6-0011-R8a-SM-5L3GF 50-59 years, male 16.3
GTEX-13SLW-0011-R8b-SM-5SI64 70-79 years, male 16.3
GTEX-1R46S-0011-R8a-SM-F3K4Q 60-69 years, female 16.3
GTEX-1LSVX-0011-R8a-SM-F2TB3 60-69 years, male 16.1
GTEX-1RDX4-0011-R8a-SM-G8LLT 50-59 years, female 16.0
GTEX-14DAQ-0011-R8a-SM-G9ERP 60-69 years, female 15.9
GTEX-X4XX-0011-R8B-SM-46MWM 60-69 years, male 15.9
GTEX-1H3NZ-0011-R8a-SM-CKZP6 60-69 years, male 15.7
GTEX-1QEPI-0011-R8a-SM-G8LLI 60-69 years, female 15.7
GTEX-1LH75-0011-R8b-SM-F2TB2 50-59 years, female 15.6
GTEX-1NV5F-0011-R8b-SM-F647Z 60-69 years, female 15.6
GTEX-12ZZX-0011-R8a-SM-5DUW8 40-49 years, female 15.5
GTEX-13NYB-0011-R8a-SM-5KM4R 40-49 years, male 15.5
GTEX-11GSO-0011-R8b-SM-GJ3PM 60-69 years, male 15.4
GTEX-1LSNL-0011-R8b-SM-F2TAH 50-59 years, male 15.2
GTEX-13X6K-0011-R8b-SM-5PNZ4 60-69 years, female 15.1
GTEX-1HT8W-0011-R8b-SM-CM2SX 30-39 years, male 15.1
GTEX-11DXY-0011-R8a-SM-DO11M 60-69 years, male 14.9
GTEX-16XZZ-0011-R8b-SM-7LT8S 60-69 years, male 14.9
GTEX-1GZ2Q-0011-R8a-SM-CE6RO 40-49 years, male 14.8
GTEX-NPJ8-0011-R8a-SM-2HMLG 40-49 years, male 14.6
GTEX-14JIY-0011-R8a-SM-6AJAP 60-69 years, male 14.5
GTEX-ZVZQ-0011-R8a-SM-51MR5 60-69 years, female 14.4
GTEX-12WSM-0011-R8a-SM-5DUWJ 60-69 years, male 14.3
GTEX-1399T-0011-R8b-SM-5IJD8 60-69 years, male 14.2
GTEX-13RTJ-0011-R8b-SM-5O9DL 60-69 years, male 14.2
GTEX-1HSKV-0011-R8a-SM-CL54X 60-69 years, male 14.2
GTEX-14BMV-0011-R8a-SM-G9ERM 50-59 years, male 14.1
GTEX-1JJEA-0011-R8a-SM-F3419 60-69 years, male 14.1
GTEX-1O9I2-0011-R8a-SM-F2TAX 50-59 years, male 14.1
GTEX-WZTO-0011-R8A-SM-4E3II 40-49 years, male 14.1
GTEX-11ONC-0011-R8b-SM-5NQ87 60-69 years, male 13.5
GTEX-147F4-0011-R8b-SM-5S2UN 50-59 years, male 13.5
GTEX-117XS-0011-R8b-SM-GHWOD 60-69 years, male 13.4
GTEX-1KD4Q-0011-R8a-SM-F341N 40-49 years, male 13.4
GTEX-1IKK5-0011-R8b-SM-CJI45 60-69 years, male 13.2
GTEX-1GTWX-0011-R8a-SM-CE6RM 60-69 years, male 13.1
GTEX-1J8Q2-0011-R8b-SM-D4P2E 60-69 years, male 13.0
GTEX-X585-0011-R8A-SM-46MUX 50-59 years, male 12.9
GTEX-13PLJ-0011-R8a-SM-GJ3QG 60-69 years, female 12.8
GTEX-ZDXO-0011-R8a-SM-4WWD7 60-69 years, male 12.8
GTEX-ZAJG-0011-R8a-SM-H6Q6K 50-59 years, female 12.6
GTEX-13N1W-0011-R8a-SM-5MR56 70-79 years, male 12.3
GTEX-11OF3-0011-R8b-SM-57WCS 60-69 years, male 12.2
GTEX-13O3Q-0011-R8b-SM-5KM2J 50-59 years, male 12.1
GTEX-1LG7Y-0011-R8b-SM-F3K5C 50-59 years, male 12.0
GTEX-1B8L1-0011-R8b-SM-7P8ST 60-69 years, male 11.8
GTEX-1HCVE-0011-R8a-SM-ARU7A 50-59 years, male 11.7
GTEX-Z93S-0011-R8a-SM-4RGNL 50-59 years, male 11.5
GTEX-1192X-0011-R8b-SM-DO11U 50-59 years, male 11.4
GTEX-16NPV-0011-R8a-SM-7EPH8 50-59 years, female 11.4
GTEX-14PJM-0011-R8b-SM-69LPD 50-59 years, female 11.3
GTEX-XMD1-0011-R8A-SM-4AT48 60-69 years, male 11.3
GTEX-17HG3-0011-R8a-SM-79OK7 30-39 years, female 11.2
GTEX-ZAK1-0011-R8a-SM-H7OGE 50-59 years, female 10.8
GTEX-14PJO-0011-R8a-SM-6AJAL 60-69 years, male 10.6
GTEX-1E2YA-0011-R8a-SM-CKZNG 50-59 years, male 10.4
GTEX-1H1ZS-0011-R8b-SM-A9SKA 70-79 years, male 10.3
GTEX-1F48J-0011-R8a-SM-9OSWW 50-59 years, female 10.2
GTEX-1LVA9-0011-R8a-SM-F3K5G 50-59 years, male 10.1
GTEX-1MJK2-0011-R8a-SM-F341I 50-59 years, male 10.1
GTEX-144GL-0011-R8a-SM-5Q5B1 50-59 years, male 9.8
GTEX-14LZ3-0011-R8b-SM-COH3M 60-69 years, female 9.8
GTEX-14C5O-0011-R8a-SM-5YYAG 60-69 years, male 9.7
GTEX-PWO3-0011-R8A-SM-2I5GD 60-69 years, female 9.7
GTEX-YJ89-0011-R8b-SM-4SOK8 60-69 years, male 9.7
GTEX-1MA7X-0011-R8a-SM-G9EQD 60-69 years, male 9.6
GTEX-13OVH-0011-R8b-SM-5MR35 70-79 years, male 9.5
GTEX-17EVQ-0011-R8a-SM-7189T 70-79 years, male 9.4
GTEX-1477Z-0011-R8b-SM-5S2RG 60-69 years, male 9.2
GTEX-11WQC-0011-R8b-SM-57WCH 60-69 years, male 9.1
GTEX-1GN73-0011-R8b-SM-CKZNY 60-69 years, male 9.1
GTEX-1J1OQ-0011-R8a-SM-ACKVE 40-49 years, female 9.0
GTEX-1POEN-0011-R8b-SM-F647O 30-39 years, female 9.0
GTEX-15RJE-0011-R8a-SM-H7OGM 40-49 years, male 8.4
GTEX-13OW7-0011-R8b-SM-5L3HR 50-59 years, male 8.3
GTEX-1F52S-0011-R8a-SM-9OSXA 60-69 years, female 8.2
GTEX-1JMOU-0011-R8b-SM-F2TA9 60-69 years, female 8.2
GTEX-14PN4-0011-R8a-SM-6EU1H 50-59 years, male 8.0
GTEX-1F75A-0011-R8a-SM-CL539 50-59 years, male 8.0
GTEX-1R9PO-0011-R8a-SM-F2TA3 60-69 years, female 7.9
GTEX-16GPK-0011-R8a-SM-79OMQ 60-69 years, male 7.8
GTEX-13O3O-0011-R8b-SM-5LUAL 60-69 years, female 7.7
GTEX-17EVP-0011-R8b-SM-7DUF9 40-49 years, male 7.7
GTEX-15CHQ-0011-R8b-SM-CNPO4 60-69 years, male 7.6
GTEX-1A8G6-0011-R8a-SM-7P8PD 60-69 years, male 7.5
GTEX-1AX9I-0011-R8a-SM-7P8PJ 60-69 years, male 7.5
GTEX-1I1CD-0011-R8b-SM-CJI3X 60-69 years, female 7.4
GTEX-1QP6S-0011-R8a-SM-F649M 40-49 years, male 7.2
GTEX-11WQK-0011-R8a-SM-5BC7C 50-59 years, male 7.1
GTEX-1GZ4I-0011-R8b-SM-9WG76 50-59 years, male 7.1
GTEX-1QMI2-0011-R8a-SM-F3429 60-69 years, male 7.1
GTEX-YFC4-0011-R8a-SM-4SOK3 40-49 years, female 7.1
GTEX-1N2EF-0011-R8a-SM-F6481 60-69 years, male 6.9
GTEX-1IY9M-0011-R8a-SM-EYYWW 60-69 years, male 6.8
GTEX-ZF28-0011-R8a-SM-4WWFW 60-69 years, male 6.8
GTEX-1PPGY-0011-R8a-SM-F649R 60-69 years, male 6.7
GTEX-1LKK1-0011-R8a-SM-F341O 50-59 years, female 6.6
GTEX-1RAZS-0011-R8a-SM-F2TBI 50-59 years, male 6.6
GTEX-15G19-0011-R8b-SM-7KUL1 60-69 years, male 6.5
GTEX-16Z82-0011-R8a-SM-7DUEX 60-69 years, male 6.4
GTEX-1CB4H-0011-R8b-SM-CJI26 60-69 years, female 6.4
GTEX-13X6J-0011-R8b-SM-5PNUA 50-59 years, male 6.3
GTEX-NL4W-0011-R8a-SM-2I3G4 50-59 years, male 6.3
GTEX-139TS-0011-R8a-SM-5J1NP 60-69 years, male 6.1
GTEX-1CB4G-0011-R8b-SM-9WG7H 60-69 years, male 6.1
GTEX-13CF2-0011-R8b-SM-5IJCX 60-69 years, male 6.0
GTEX-1C64N-0011-R8b-SM-7MGXE 50-59 years, male 6.0
GTEX-1HCU6-0011-R8a-SM-CJI3R 60-69 years, female 6.0
GTEX-1RQEC-0011-R8b-SM-F648X 60-69 years, male 5.9
GTEX-13OW8-0011-R8a-SM-5L3G5 60-69 years, male 5.8
GTEX-15DYW-0011-R8b-SM-GRR3B 60-69 years, female 5.8
GTEX-1IDJH-0011-R8b-SM-ARZLL 70-79 years, male 5.8
GTEX-14753-0011-R8b-SM-5S2U1 60-69 years, male 5.7
GTEX-13QIC-0011-R8b-SM-5O9CV 60-69 years, female 5.6
GTEX-1CAV2-0011-R8a-SM-GRR24 40-49 years, female 5.6
GTEX-ZYY3-0011-R8a-SM-H7OHF 60-69 years, female 5.5
GTEX-1IKOH-0011-R8a-SM-A9SKG 60-69 years, female 5.4
GTEX-16YQH-0011-R8a-SM-7DUFB 30-39 years, male 5.2
GTEX-18465-0011-R8b-SM-7LG6O 50-59 years, male 5.2
GTEX-13OVL-0011-R8a-SM-5L3HH 50-59 years, male 5.1
GTEX-OXRN-0011-R8A-SM-E9TI1 50-59 years, male 5.1
GTEX-1E1VI-0011-R8b-SM-ARU8E 50-59 years, male 5.0
GTEX-1I1GS-0011-R8b-SM-CKZPE 60-69 years, male 5.0
GTEX-1445S-0011-R8a-SM-5PNWX 60-69 years, male 4.8
GTEX-14PQA-0011-R8b-SM-6AJAB 50-59 years, female 4.8
GTEX-1HB9E-0011-R8b-SM-A9G1O 50-59 years, male 4.8
GTEX-1HGF4-0011-R8b-SM-CKZP9 60-69 years, male 4.8
GTEX-1313W-0011-R8a-SM-5DUVM 50-59 years, female 4.6
GTEX-131XW-0011-R8a-SM-5DUWY 50-59 years, female 4.5
GTEX-1N5O9-0011-R8a-SM-F649C 60-69 years, male 4.4
GTEX-1LVAO-0011-R8a-SM-F3K5J 60-69 years, male 4.2
GTEX-Y8DK-0011-R8B-SM-EYYVQ 60-69 years, male 4.2
GTEX-132Q8-0011-R8b-SM-5DUWX 60-69 years, male 4.0
GTEX-13NYS-0011-R8a-SM-5MR5H 60-69 years, male 4.0
GTEX-14BIL-0011-R8b-SM-69LQK 50-59 years, male 4.0
GTEX-1GMR8-0011-R8a-SM-CKZNX 50-59 years, female 4.0
GTEX-1N2DW-0011-R8a-SM-EY5YD 50-59 years, male 4.0
GTEX-1HBPI-0011-R8a-SM-A9G1S 50-59 years, male 3.9
GTEX-ZVT3-0011-R8b-SM-57WDJ 60-69 years, female 3.9
GTEX-13PDP-0011-R8b-SM-5O9CS 60-69 years, male 3.8
GTEX-13VXU-0011-R8b-SM-GJ3RR 50-59 years, male 3.8
GTEX-1B8SG-0011-R8b-SM-7IGNW 50-59 years, male 3.8
GTEX-1JN6P-0011-R8a-SM-F6499 60-69 years, male 3.8
GTEX-117YW-0011-R8a-SM-GINAB 50-59 years, male 3.7
GTEX-11NV4-0011-R8b-SM-GHWO4 60-69 years, male 3.7
GTEX-13OW5-0011-R8a-SM-5L3GQ 60-69 years, male 3.7
GTEX-1B933-0011-R8a-SM-9QEGX 50-59 years, female 3.6
GTEX-1F6I4-0011-R8a-SM-9QEIA 60-69 years, male 3.6
GTEX-1GZHY-0011-R8b-SM-9OSWK 50-59 years, female 3.6
GTEX-1KANB-0011-R8a-SM-F3K5N 50-59 years, male 3.6
GTEX-QMR6-0011-R8A-SM-32PKJ 50-59 years, male 3.6
GTEX-QVJO-0011-R8A-SM-447C7 60-69 years, female 3.6
GTEX-WL46-0011-R8B-SM-H7OHG 50-59 years, male 3.6
GTEX-15EO6-0011-R8a-SM-H6Q6R 50-59 years, male 3.5
GTEX-145LU-0011-R8b-SM-5PNZG 50-59 years, male 3.4
GTEX-QDT8-0011-R8A-SM-G8W63 30-39 years, female 3.3
GTEX-13QJC-0011-R8b-SM-5S2U6 60-69 years, female 3.2
GTEX-1A3MX-0011-R8a-SM-7P8PI 60-69 years, male 3.2
GTEX-1EMGI-0011-R8b-SM-9QEID 60-69 years, male 3.2
GTEX-11DZ1-0011-R8b-SM-DNZZI 50-59 years, male 3.1
GTEX-1GN1V-0011-R8a-SM-CKZNV 60-69 years, male 3.1
GTEX-11O72-0011-R8a-SM-GJ3R9 40-49 years, male 3.0
GTEX-145LS-0011-R8b-SM-5PNXA 60-69 years, female 3.0
GTEX-ZXG5-0011-R8a-SM-57WD1 60-69 years, male 3.0
GTEX-1CB4J-0011-R8a-SM-9QEHU 60-69 years, male 2.8
GTEX-1F75W-0011-R8a-SM-9QEI4 60-69 years, male 2.8
GTEX-1PWST-0011-R8a-SM-F3K5P 70-79 years, male 2.8
GTEX-12126-0011-R8a-SM-GI4WV 20-29 years, male 2.7
GTEX-12696-0011-R8a-SM-GINAP 60-69 years, male 2.7
GTEX-13G51-0011-R8b-SM-5LZZ4 60-69 years, male 2.7
GTEX-13SLX-0011-R8b-SM-5PNWZ 50-59 years, female 2.7
GTEX-QVUS-0011-R8A-SM-3GAD7 60-69 years, female 2.7
GTEX-13FLV-0011-R8a-SM-5LZZE 50-59 years, male 2.6
GTEX-1BAJH-0011-R8a-SM-7MXUB 70-79 years, male 2.5
GTEX-1I1HK-0011-R8b-SM-E8VN9 60-69 years, male 2.5
GTEX-1JMQJ-0011-R8a-SM-G8LKT 50-59 years, male 2.5
GTEX-X261-0011-R8A-SM-4E3I5 50-59 years, male 2.5
GTEX-1C6WA-0011-R8b-SM-7P8S7 60-69 years, male 2.4
GTEX-17F97-0011-R8a-SM-7DUET 50-59 years, male 2.3
GTEX-1B996-0011-R8b-SM-79OOS 60-69 years, male 2.3
GTEX-1GN2E-0011-R8a-SM-CE6RK 60-69 years, male 2.2
GTEX-1JMPZ-0011-R8b-SM-F341A 30-39 years, male 2.2
GTEX-T6MN-0011-R8A-SM-32QP3 50-59 years, male 2.2
GTEX-RNOR-0011-R8A-SM-EZ6MN 50-59 years, female 2.1
GTEX-1HFI6-0011-R8a-SM-ARZLP 40-49 years, male 2.0
GTEX-1JN1M-0011-R8b-SM-F6485 60-69 years, female 2.0
GTEX-1OJC4-0011-R8a-SM-F3K5B 50-59 years, female 2.0
GTEX-P44H-0011-R8A-SM-2XCEL 40-49 years, male 1.8
GTEX-13PVQ-0011-R8a-SM-GJ3PT 50-59 years, male 1.7
GTEX-11H98-0011-R8a-SM-5NQ8V 50-59 years, male 1.6
GTEX-13X6I-0011-R8a-SM-5PNZF 60-69 years, male 1.5
GTEX-11GS4-0011-R8b-SM-GI4XA 60-69 years, male 1.4
GTEX-13JVG-0011-R8a-SM-5KM3E 60-69 years, male 1.4
GTEX-1H1DG-0011-R8a-SM-CL54Z 70-79 years, male 1.4
GTEX-1HBPH-0011-R8b-SM-CL556 40-49 years, female 1.4
GTEX-WWYW-0011-R8A-SM-3NB3S 50-59 years, female 1.4
GTEX-1JMQK-0011-R8a-SM-G8LMS 60-69 years, male 1.3
GTEX-1KWVE-0011-R8a-SM-F3K4V 30-39 years, male 1.3
GTEX-WVLH-0011-R8A-SM-3MJFC 50-59 years, male 1.2
GTEX-11GSP-0011-R8b-SM-5NQ79 60-69 years, female 1.1
GTEX-X4XY-0011-R8A-SM-46MVC 60-69 years, male 1.1
GTEX-WHSE-0011-R8A-SM-3P5Z1 20-29 years, male 1.0
GTEX-ZAB4-0011-R8b-SM-4SOKF 40-49 years, male 1.0
GTEX-15SHU-0011-R8a-SM-H6Q7V 40-49 years, female 0.9
GTEX-1B8SF-0011-R8b-SM-7P8SX 60-69 years, male 0.9
GTEX-ZZPT-0011-R8a-SM-GQ1CW 50-59 years, male 0.9
GTEX-1GF9W-0011-R8b-SM-9QEIR 60-69 years, male 0.8
GTEX-11EMC-0011-R8b-SM-DO91Z 60-69 years, female 0.7
GTEX-1H23P-0011-R8b-SM-A9G1G 60-69 years, male 0.7
GTEX-T5JC-0011-R8A-SM-32PLM 20-29 years, male 0.7
GTEX-11ZU8-0011-R8b-SM-GHWOM 60-69 years, male 0.6
GTEX-15DCD-0011-R8b-SM-7KUEF 70-79 years, female 0.6
GTEX-1RQED-0011-R8a-SM-G8LKO 60-69 years, male 0.6
GTEX-S7SE-0011-R8A-SM-F649T 50-59 years, male 0.5
GTEX-1CAMQ-0011-R8a-SM-ARU85 40-49 years, male 0.4
GTEX-11EI6-0011-R8a-SM-DO93M 60-69 years, male 0.3
GTEX-N7MS-0011-R8a-SM-2YUMK 60-69 years, male 0.3
GTEX-1GN1U-0011-R8a-SM-CL537 50-59 years, female 0.2
GTEX-11TTK-0011-R8b-SM-DO111 60-69 years, female 0.1
GTEX-13112-0011-R8b-SM-664OV 50-59 years, male 0.1
GTEX-131XH-0011-R8a-SM-5EGLL 50-59 years, male 0.1
GTEX-14E7W-0011-R8b-SM-GQ1D6 70-79 years, male 0.1
GTEX-1RLM8-0011-R8a-SM-EYYXR 50-59 years, male 0.1
GTEX-11DYG-0011-R8a-SM-DO93F 60-69 years, male 0.0
GTEX-11ZUS-0011-R8a-SM-5BC73 30-39 years, male 0.0
GTEX-12WSA-0011-R8a-SM-5P9EX 60-69 years, male 0.0
GTEX-12WSD-0011-R8b-SM-9QEGI 60-69 years, female 0.0
GTEX-13FLW-0011-R8b-SM-5J1MZ 50-59 years, male 0.0
GTEX-13OVJ-0011-R8b-SM-5L3FS 50-59 years, female 0.0
GTEX-145MH-0011-R8a-SM-5PNUL 50-59 years, male 0.0
GTEX-1H3O1-0011-R8a-SM-CL555 60-69 years, male 0.0
GTEX-1ICLZ-0011-R8b-SM-ACKX4 60-69 years, male 0.0
GTEX-1R9K4-0011-R8b-SM-F649L 60-69 years, male 0.0
GTEX-RVPV-0011-R8A-SM-F21II 60-69 years, male 0.0
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HYPOTHALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

13.6
Pig sample Sample description nTPM
Hypothalamus
nTPM: 13.6
Samples: 4

Max nTPM: 20.8
Min nTPM: 3.8
Sample A Female 20.8
Sample B Female 13.1
Sample C Male 3.8
Sample D Male 16.7

HYPOTHALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

10.2
Mouse sample Sample description nTPM
Hypothalamus
nTPM: 10.2
Samples: 4

Max nTPM: 12.7
Min nTPM: 9.1
Sample A Male 12.7
Sample B Male 10.0
Sample C Female 9.1
Sample D Female 9.1

HYPOTHALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

20.3
Allen experiment id Experiment description Expression energy
Hypothalamus
Expression energy: 20.3
74988460 Antisense, RP_060315_05_E03, Mouse strain C57BL/6J (56 days, male) 22.3
70445269 Antisense, RP_050614_03_D06, Mouse strain C57BL/6J (56 days, male) 18.3

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