MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.8 nTPM
HPA Brain:60.3 nTPM
GTEx:15.8 nTPM
FANTOM5:98.9 Scaled Tags Per Million
Pig:38.3 nTPM
Mouse:22.3 nTPM
Allen mouse:0.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 60.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 50.5
1830 Male, age 51, unknown 62.2
1833 Male, age 53, unknown 60.3
1870 Female, age 42, unknown 59.3
2828 Female, age 72, unknown 54.5
2411 Female, age 72, unknown 52.6
2019 Male, age 18, unknown 51.6
2666 Male, age 74, left hemisphere 43.1
1827 Male, age 72, unknown 41.6
2219 Male, age 76, both hemispheres 41.3
2586 Male, age 75, left hemisphere 38.6
Dorsal raphe nucleus
nTPM: 48.8
2016 Female, age 72, unknown 58.8
1828 Male, age 53, unknown 50.1
2750 Male, age 76, both hemispheres 49.7
2298 Female, age 72, unknown 45.3
2047 Male, age 72, unknown 40.1
Inferior colliculus
nTPM: 45.3
2849 Male, age 72, unknown 47.8
1848 Female, age 42, unknown 47.2
1890 Male, age 53, unknown 45.1
2097 Female, age 72, unknown 41.1
Median raphe nucleus
nTPM: 41.6
2220 Male, age 76, midline 41.6
Periaquaductal grey, anterior
nTPM: 50.6
2502 Female, age 75, unknown 59.1
1947 Male, age 18, unknown 52.2
1795 Male, age 51, unknown 40.4
Periaquaductal grey, dorsal
nTPM: 48.6
2850 Male, age 76, both hemispheres 63.4
2464 Female, age 72, unknown 48.6
1831 Male, age 72, unknown 45.5
1840 Male, age 53, unknown 36.8
Periaquaductal grey, lateral
nTPM: 53.6
2140 Male, age 76, both hemispheres 57.0
2272 Male, age 74, both hemispheres 56.1
2053 Male, age 18, unknown 47.9
Pretectal area
nTPM: 45.6
2273 Male, age 74, both hemispheres 55.3
1815 Male, age 53, unknown 51.6
2316 Male, age 76, right hemisphere 51.2
2407 Male, age 75, both hemispheres 48.2
2667 Female, age 75, unknown 46.2
2825 Male, age 18, unknown 46.0
2224 Female, age 72, unknown 44.1
1817 Female, age 42, unknown 43.3
2007 Male, age 72, unknown 42.5
1944 Female, age 72, unknown 36.6
1816 Male, age 51, unknown 36.3
Red nucleus
nTPM: 60.3
1904 Male, age 53, unknown 73.6
1865 Male, age 51, unknown 73.1
1821 Female, age 72, unknown 65.8
2227 Male, age 72, unknown 63.9
2503 Female, age 72, unknown 63.3
1954 Female, age 42, unknown 62.4
2769 Male, age 72, unknown 61.4
2785 Male, age 18, unknown 60.4
2823 Male, age 76, right hemisphere 58.3
2725 Female, age 75, unknown 52.5
2588 Male, age 74, left hemisphere 47.1
2584 Male, age 75, left hemisphere 41.9
Substantia nigra
nTPM: 46.9
2409 Female, age 72, unknown 66.5
2699 Male, age 18, unknown 55.8
2583 Male, age 75, right hemisphere 47.1
2590 Female, age 75, unknown 46.8
1851 Male, age 51, unknown 45.5
2241 Male, age 72, unknown 43.9
1889 Female, age 72, unknown 43.7
1941 Male, age 53, unknown 40.4
2665 Male, age 74, both hemispheres 40.1
1916 Female, age 42, unknown 38.5
Superior colliculus
nTPM: 50.3
1995 Male, age 72, unknown 71.3
1913 Female, age 42, unknown 69.7
1895 Male, age 76, right hemisphere 55.1
2587 Male, age 74, left hemisphere 52.6
1839 Male, age 51, unknown 50.8
2668 Female, age 75, unknown 45.5
1796 Male, age 53, unknown 41.6
2261 Male, age 18, unknown 40.7
2664 Male, age 75, both hemispheres 39.1
2087 Female, age 72, unknown 36.7
Ventral tegmental area
nTPM: 46.5
2410 Female, age 72, unknown 51.9
2223 Female, age 72, unknown 48.2
1942 Male, age 51, unknown 45.8
2021 Male, age 53, unknown 45.8
2218 Male, age 76, both hemispheres 45.1
1915 Female, age 42, unknown 41.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 15.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.8
Samples: 183

Max nTPM: 31.6
Min nTPM: 6.0
Std nTPM: 4.3
Median nTPM: 15.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 31.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 28.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 27.0
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 26.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 26.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 26.3
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 24.2
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 24.2
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 23.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 23.3
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 23.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 98.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 98.9
FF:10158-103A5 76 years, female 98.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 38.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 38.2
Samples: 4

Max nTPM: 48.1
Min nTPM: 33.7
Sample A Female 36.4
Sample B Female 33.7
Sample C Male 34.7
Sample D Male 48.1
Midbrain
nTPM: 38.4
Samples: 4

Max nTPM: 49.8
Min nTPM: 31.2
Sample A Female 49.8
Sample B Female 39.9
Sample C Male 32.5
Sample D Male 31.2
Periaqueductal gray
nTPM: 37.8
Samples: 3

Max nTPM: 40.8
Min nTPM: 33.4
Sample B Female 39.3
Sample C Male 33.4
Sample D Male 40.8
Superior colliculi
nTPM: 36.3
Samples: 4

Max nTPM: 40.7
Min nTPM: 29.9
Sample A Female 38.3
Sample B Female 29.9
Sample C Male 36.4
Sample D Male 40.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 22.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.3
Samples: 4

Max nTPM: 24.0
Min nTPM: 20.1
Sample A Male 22.6
Sample B Male 24.0
Sample C Female 22.5
Sample D Female 20.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
75931470 Antisense, RP_060601_03_D11, Mouse strain C57BL/6J (56 days, male) 0.2

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