MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:38.7 nTPM
HPA Brain:84.5 nTPM
GTEx:38.7 nTPM
FANTOM5:74.9 Scaled Tags Per Million
Pig:93.9 nTPM
Mouse:68.4 nTPM
Allen mouse:3.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 84.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 73.4
2586 Male, age 75, left hemisphere 106.6
1833 Male, age 53, unknown 78.3
2411 Female, age 72, unknown 74.1
1830 Male, age 51, unknown 73.2
1870 Female, age 42, unknown 72.7
2666 Male, age 74, left hemisphere 70.3
1827 Male, age 72, unknown 69.9
2828 Female, age 72, unknown 68.9
2019 Male, age 18, unknown 65.6
2219 Male, age 76, both hemispheres 54.2
Dorsal raphe nucleus
nTPM: 72.5
1828 Male, age 53, unknown 80.4
2750 Male, age 76, both hemispheres 76.7
2047 Male, age 72, unknown 72.5
2016 Female, age 72, unknown 70.0
2298 Female, age 72, unknown 63.2
Inferior colliculus
nTPM: 72.9
2849 Male, age 72, unknown 75.3
1890 Male, age 53, unknown 74.4
2097 Female, age 72, unknown 71.8
1848 Female, age 42, unknown 70.2
Median raphe nucleus
nTPM: 68.8
2220 Male, age 76, midline 68.8
Periaquaductal grey, anterior
nTPM: 64.3
1947 Male, age 18, unknown 70.6
2502 Female, age 75, unknown 62.3
1795 Male, age 51, unknown 60.0
Periaquaductal grey, dorsal
nTPM: 69.9
1840 Male, age 53, unknown 73.2
2850 Male, age 76, both hemispheres 70.9
2464 Female, age 72, unknown 68.0
1831 Male, age 72, unknown 67.7
Periaquaductal grey, lateral
nTPM: 64.1
2140 Male, age 76, both hemispheres 71.9
2053 Male, age 18, unknown 64.5
2272 Male, age 74, both hemispheres 55.9
Pretectal area
nTPM: 58.3
2825 Male, age 18, unknown 70.9
1817 Female, age 42, unknown 61.6
2316 Male, age 76, right hemisphere 60.1
2224 Female, age 72, unknown 59.3
1815 Male, age 53, unknown 59.1
2407 Male, age 75, both hemispheres 57.4
1816 Male, age 51, unknown 57.2
1944 Female, age 72, unknown 57.0
2007 Male, age 72, unknown 55.8
2667 Female, age 75, unknown 54.2
2273 Male, age 74, both hemispheres 48.5
Red nucleus
nTPM: 81.6
2584 Male, age 75, left hemisphere 93.2
1821 Female, age 72, unknown 92.8
2588 Male, age 74, left hemisphere 86.3
2725 Female, age 75, unknown 82.3
2227 Male, age 72, unknown 81.7
1954 Female, age 42, unknown 81.0
2769 Male, age 72, unknown 80.7
2823 Male, age 76, right hemisphere 80.5
1865 Male, age 51, unknown 79.9
1904 Male, age 53, unknown 78.7
2503 Female, age 72, unknown 76.4
2785 Male, age 18, unknown 66.4
Substantia nigra
nTPM: 84.5
2241 Male, age 72, unknown 92.2
1851 Male, age 51, unknown 90.8
2590 Female, age 75, unknown 90.3
1916 Female, age 42, unknown 87.0
2699 Male, age 18, unknown 86.3
2665 Male, age 74, both hemispheres 84.9
2409 Female, age 72, unknown 84.6
2583 Male, age 75, right hemisphere 82.3
1941 Male, age 53, unknown 73.6
1889 Female, age 72, unknown 72.9
Superior colliculus
nTPM: 63.4
1839 Male, age 51, unknown 68.7
1895 Male, age 76, right hemisphere 67.8
2587 Male, age 74, left hemisphere 65.9
2664 Male, age 75, both hemispheres 65.2
1796 Male, age 53, unknown 65.1
2668 Female, age 75, unknown 64.4
1995 Male, age 72, unknown 62.4
2261 Male, age 18, unknown 61.5
1913 Female, age 42, unknown 61.1
2087 Female, age 72, unknown 52.0
Ventral tegmental area
nTPM: 75.1
1915 Female, age 42, unknown 81.9
2410 Female, age 72, unknown 80.5
2223 Female, age 72, unknown 78.4
2218 Male, age 76, both hemispheres 74.3
1942 Male, age 51, unknown 69.8
2021 Male, age 53, unknown 65.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 38.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.7
Samples: 183

Max nTPM: 69.5
Min nTPM: 16.2
Std nTPM: 10.0
Median nTPM: 36.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 69.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 64.8
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 63.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 62.7
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 60.5
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 59.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 58.8
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 58.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 58.2
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 57.3
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 56.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 74.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 74.9
FF:10158-103A5 76 years, female 74.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 93.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 82.4
Samples: 4

Max nTPM: 97.7
Min nTPM: 60.0
Sample A Female 88.8
Sample B Female 60.0
Sample C Male 83.2
Sample D Male 97.7
Midbrain
nTPM: 93.9
Samples: 4

Max nTPM: 118.4
Min nTPM: 71.7
Sample A Female 118.4
Sample B Female 71.7
Sample C Male 109.3
Sample D Male 76.3
Periaqueductal gray
nTPM: 64.4
Samples: 3

Max nTPM: 68.2
Min nTPM: 62.2
Sample B Female 68.2
Sample C Male 62.7
Sample D Male 62.2
Superior colliculi
nTPM: 78.5
Samples: 4

Max nTPM: 98.0
Min nTPM: 46.8
Sample A Female 86.2
Sample B Female 46.8
Sample C Male 82.8
Sample D Male 98.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 68.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 68.4
Samples: 4

Max nTPM: 72.8
Min nTPM: 63.6
Sample A Male 63.6
Sample B Male 71.0
Sample C Female 72.8
Sample D Female 66.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.9
68798729 Antisense, RP_050217_01_B06, Mouse strain C57BL/6J (56 days, male) 3.9

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