MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:31.6 nTPM
HPA Brain:38.5 nTPM
GTEx:31.6 nTPM
FANTOM5:59.6 Scaled Tags Per Million
Pig:24.8 nTPM
Mouse:7.2 nTPM
Allen mouse:0.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 38.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 31.3
2586 Male, age 75, left hemisphere 39.6
2666 Male, age 74, left hemisphere 38.9
2828 Female, age 72, unknown 32.7
2411 Female, age 72, unknown 32.1
1827 Male, age 72, unknown 31.0
2219 Male, age 76, both hemispheres 30.9
2019 Male, age 18, unknown 29.2
1870 Female, age 42, unknown 28.0
1833 Male, age 53, unknown 25.9
1830 Male, age 51, unknown 24.7
Dorsal raphe nucleus
nTPM: 31.7
2750 Male, age 76, both hemispheres 34.2
2047 Male, age 72, unknown 33.0
2298 Female, age 72, unknown 32.3
1828 Male, age 53, unknown 30.9
2016 Female, age 72, unknown 28.0
Inferior colliculus
nTPM: 27.9
1848 Female, age 42, unknown 30.1
2849 Male, age 72, unknown 28.4
2097 Female, age 72, unknown 28.0
1890 Male, age 53, unknown 25.2
Median raphe nucleus
nTPM: 38.2
2220 Male, age 76, midline 38.2
Periaquaductal grey, anterior
nTPM: 30.3
2502 Female, age 75, unknown 30.9
1795 Male, age 51, unknown 30.5
1947 Male, age 18, unknown 29.4
Periaquaductal grey, dorsal
nTPM: 23.3
1840 Male, age 53, unknown 27.3
2464 Female, age 72, unknown 23.9
1831 Male, age 72, unknown 22.7
2850 Male, age 76, both hemispheres 19.2
Periaquaductal grey, lateral
nTPM: 22.9
2053 Male, age 18, unknown 25.2
2140 Male, age 76, both hemispheres 22.7
2272 Male, age 74, both hemispheres 20.9
Pretectal area
nTPM: 29.0
1817 Female, age 42, unknown 39.3
1816 Male, age 51, unknown 31.8
1944 Female, age 72, unknown 31.8
2007 Male, age 72, unknown 31.0
1815 Male, age 53, unknown 30.9
2224 Female, age 72, unknown 30.4
2667 Female, age 75, unknown 28.2
2825 Male, age 18, unknown 26.8
2316 Male, age 76, right hemisphere 24.2
2407 Male, age 75, both hemispheres 22.6
2273 Male, age 74, both hemispheres 21.8
Red nucleus
nTPM: 29.6
2503 Female, age 72, unknown 33.8
2785 Male, age 18, unknown 33.0
1821 Female, age 72, unknown 31.8
1904 Male, age 53, unknown 31.7
2725 Female, age 75, unknown 31.3
2227 Male, age 72, unknown 31.1
2769 Male, age 72, unknown 29.4
2584 Male, age 75, left hemisphere 28.9
1865 Male, age 51, unknown 28.4
1954 Female, age 42, unknown 25.4
2823 Male, age 76, right hemisphere 25.4
2588 Male, age 74, left hemisphere 25.3
Substantia nigra
nTPM: 38.5
1916 Female, age 42, unknown 55.6
2665 Male, age 74, both hemispheres 52.3
1851 Male, age 51, unknown 48.4
2699 Male, age 18, unknown 38.4
1941 Male, age 53, unknown 36.7
2583 Male, age 75, right hemisphere 35.8
2241 Male, age 72, unknown 33.5
1889 Female, age 72, unknown 32.2
2590 Female, age 75, unknown 29.8
2409 Female, age 72, unknown 21.9
Superior colliculus
nTPM: 28.4
1796 Male, age 53, unknown 34.1
2668 Female, age 75, unknown 32.9
2087 Female, age 72, unknown 32.6
2664 Male, age 75, both hemispheres 28.0
1895 Male, age 76, right hemisphere 27.7
1839 Male, age 51, unknown 27.4
1995 Male, age 72, unknown 26.2
2261 Male, age 18, unknown 25.8
1913 Female, age 42, unknown 25.2
2587 Male, age 74, left hemisphere 24.1
Ventral tegmental area
nTPM: 34.7
2410 Female, age 72, unknown 41.4
1915 Female, age 42, unknown 38.6
2218 Male, age 76, both hemispheres 38.3
1942 Male, age 51, unknown 31.6
2223 Female, age 72, unknown 29.8
2021 Male, age 53, unknown 28.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 31.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.6
Samples: 183

Max nTPM: 68.4
Min nTPM: 10.4
Std nTPM: 8.3
Median nTPM: 30.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 68.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 51.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 51.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 51.2
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 50.4
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 49.9
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 48.9
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 48.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 46.9
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 46.2
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 45.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 59.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 59.6
FF:10158-103A5 76 years, female 59.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 24.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 23.1
Samples: 4

Max nTPM: 29.6
Min nTPM: 19.9
Sample A Female 29.6
Sample B Female 20.3
Sample C Male 22.4
Sample D Male 19.9
Midbrain
nTPM: 24.8
Samples: 4

Max nTPM: 31.5
Min nTPM: 19.8
Sample A Female 31.5
Sample B Female 23.7
Sample C Male 19.8
Sample D Male 24.2
Periaqueductal gray
nTPM: 20.9
Samples: 3

Max nTPM: 21.8
Min nTPM: 19.5
Sample B Female 21.4
Sample C Male 21.8
Sample D Male 19.5
Superior colliculi
nTPM: 22.4
Samples: 4

Max nTPM: 28.1
Min nTPM: 18.0
Sample A Female 28.1
Sample B Female 18.0
Sample C Male 20.5
Sample D Male 23.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 7.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.2
Samples: 4

Max nTPM: 7.8
Min nTPM: 6.5
Sample A Male 6.5
Sample B Male 7.2
Sample C Female 7.8
Sample D Female 7.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
69608857 Antisense, RP_050426_04_D03, Mouse strain C57BL/6J (56 days, male) 0.3

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