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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:45.4 nTPM
HPA Brain:58.7 nTPM
GTEx:45.4 nTPM
FANTOM5:25.1 Scaled Tags Per Million
Pig:51.7 nTPM
Mouse:58.7 nTPM
Allen mouse:14.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

58.7
Sample id Sample description nTPM
Amygdala
nTPM: 50.4
2517 Female, age 94, left hemisphere 58.6
1987 Female, age 91, left hemisphere 57.7
2514 Male, age 75, right hemisphere 48.9
2695 Female, age 67, right hemisphere 44.7
2814 Male, age 76, right hemisphere 42.1
Basal amygdala
nTPM: 58.7
2685 Female, age 94, left hemisphere 63.2
2243 Female, age 91, right hemisphere 62.3
2609 Male, age 75, right hemisphere 59.8
2827 Female, age 67, right hemisphere 58.7
1955 Male, age 76, both hemispheres 55.5
2110 Male, age 80, left hemisphere 52.8
Central amygdala
nTPM: 53.8
2826 Female, age 94, left hemisphere 64.1
2239 Male, age 80, left hemisphere 56.1
2701 Female, age 91, right hemisphere 51.5
1905 Male, age 76, both hemispheres 50.4
2515 Male, age 75, right hemisphere 46.7
Corticomedial amygdala
nTPM: 56.9
2535 Female, age 67, right hemisphere 84.3
2242 Female, age 91, right hemisphere 62.6
2829 Male, age 80, left hemisphere 57.6
2429 Female, age 94, left hemisphere 51.5
2428 Male, age 75, right hemisphere 45.5
2240 Male, age 76, both hemispheres 40.2
Lateral amygdala
nTPM: 58.0
2256 Male, age 80, left hemisphere 74.4
2534 Female, age 94, left hemisphere 66.5
2255 Female, age 91, right hemisphere 62.3
1883 Male, age 76, both hemispheres 49.4
2516 Male, age 75, right hemisphere 49.0
2830 Female, age 67, right hemisphere 46.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

45.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 45.4
Samples: 181

Max nTPM: 92.8
Min nTPM: 21.2
Std nTPM: 9.9
Median nTPM: 45.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 92.8
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 74.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 70.2
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 63.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 63.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 63.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 63.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 62.0
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 61.6
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 61.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 60.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 60.6
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 60.2
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 60.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 58.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 58.3
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 57.8
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 57.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 57.5
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 56.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 56.2
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 56.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 55.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 55.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 55.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 55.2
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 55.1
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 54.6
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 54.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 54.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 54.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 53.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 53.5
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 53.2
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 52.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 52.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 52.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 52.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 51.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 51.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 51.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 51.4
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 51.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 51.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 51.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 51.0
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 50.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 50.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 50.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 50.4
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 50.2
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 49.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 49.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 49.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 49.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 49.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 49.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 49.1
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 48.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 48.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 48.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 48.5
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 48.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 48.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 48.2
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 48.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 47.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 47.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 47.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 47.4
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 47.4
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 47.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 47.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 47.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 47.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 47.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 46.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 46.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 46.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 46.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 46.1
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 46.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 46.0
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 46.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 46.0
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 45.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 45.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 45.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 45.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 45.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 45.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 45.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 44.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 44.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 44.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 44.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 44.7
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 44.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 44.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 44.3
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 44.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 44.2
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 43.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 43.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 43.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 43.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 43.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 43.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 43.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 43.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 43.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 42.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 42.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 42.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 42.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 42.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 42.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 42.3
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 42.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 41.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 41.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 41.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 41.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 41.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 41.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 41.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 41.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 41.2
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 41.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 40.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 40.4
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 40.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 40.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 40.1
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 40.1
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 40.0
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 39.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 39.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 39.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 38.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 38.5
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 38.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 38.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 37.9
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 37.3
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 37.3
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 37.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 36.9
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 36.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 36.9
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 36.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 36.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 35.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 35.6
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 35.5
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 35.0
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 34.8
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 34.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 34.4
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 34.4
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 33.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 33.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 33.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 33.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 33.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 33.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 33.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 31.2
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 31.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 30.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 29.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 29.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 28.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 27.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 26.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 26.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 26.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 25.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 25.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 21.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 21.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

25.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 25.1
FF:10151-102I7 76 years, female 25.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

51.7
Pig sample Sample description nTPM
Amygdala
nTPM: 51.7
Samples: 4

Max nTPM: 61.1
Min nTPM: 46.6
Sample A Female 61.1
Sample B Female 46.6
Sample C Male 50.7
Sample D Male 48.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

58.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 58.7
Samples: 4

Max nTPM: 60.3
Min nTPM: 57.1
Sample A Male 58.0
Sample B Male 60.3
Sample C Female 59.3
Sample D Female 57.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

14.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 14.3
293258 Antisense, RP_040617_01_A05, Mouse strain C57BL/6J (56 days, male) 16.7
81599610 Antisense, RP_071126_01_B08, Mouse strain C57BL/6J (56 days, male) 11.9

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