MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:44.5 nTPM
HPA Brain:240.1 nTPM
GTEx:44.5 nTPM
FANTOM5:52.8 Scaled Tags Per Million
Pig:256.7 nTPM
Mouse:385.9 nTPM
Allen mouse:14.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 240.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 189.0
2219 Male, age 76, both hemispheres 275.4
2666 Male, age 74, left hemisphere 230.5
1827 Male, age 72, unknown 226.3
2019 Male, age 18, unknown 189.0
2586 Male, age 75, left hemisphere 175.9
2411 Female, age 72, unknown 172.3
2828 Female, age 72, unknown 162.4
1833 Male, age 53, unknown 157.7
1870 Female, age 42, unknown 153.7
1830 Male, age 51, unknown 146.5
Dorsal raphe nucleus
nTPM: 183.5
2298 Female, age 72, unknown 260.0
2047 Male, age 72, unknown 197.9
2750 Male, age 76, both hemispheres 178.3
1828 Male, age 53, unknown 157.5
2016 Female, age 72, unknown 123.7
Inferior colliculus
nTPM: 200.2
2097 Female, age 72, unknown 232.1
2849 Male, age 72, unknown 200.7
1848 Female, age 42, unknown 198.2
1890 Male, age 53, unknown 169.8
Median raphe nucleus
nTPM: 240.1
2220 Male, age 76, midline 240.1
Periaquaductal grey, anterior
nTPM: 200.6
1947 Male, age 18, unknown 216.3
1795 Male, age 51, unknown 210.4
2502 Female, age 75, unknown 175.1
Periaquaductal grey, dorsal
nTPM: 163.3
1840 Male, age 53, unknown 175.2
1831 Male, age 72, unknown 167.6
2850 Male, age 76, both hemispheres 157.4
2464 Female, age 72, unknown 153.1
Periaquaductal grey, lateral
nTPM: 147.6
2272 Male, age 74, both hemispheres 156.1
2053 Male, age 18, unknown 146.1
2140 Male, age 76, both hemispheres 140.5
Pretectal area
nTPM: 211.8
1816 Male, age 51, unknown 288.3
1944 Female, age 72, unknown 283.6
2007 Male, age 72, unknown 282.1
1817 Female, age 42, unknown 273.5
1815 Male, age 53, unknown 222.9
2224 Female, age 72, unknown 202.3
2667 Female, age 75, unknown 201.6
2825 Male, age 18, unknown 164.7
2407 Male, age 75, both hemispheres 158.1
2273 Male, age 74, both hemispheres 127.7
2316 Male, age 76, right hemisphere 124.7
Red nucleus
nTPM: 142.4
2584 Male, age 75, left hemisphere 182.5
2785 Male, age 18, unknown 180.0
1821 Female, age 72, unknown 175.1
2725 Female, age 75, unknown 143.7
1954 Female, age 42, unknown 141.5
2823 Male, age 76, right hemisphere 136.7
2769 Male, age 72, unknown 131.8
1865 Male, age 51, unknown 130.7
2227 Male, age 72, unknown 130.3
2503 Female, age 72, unknown 119.8
1904 Male, age 53, unknown 118.8
2588 Male, age 74, left hemisphere 118.0
Substantia nigra
nTPM: 226.7
1941 Male, age 53, unknown 378.2
1916 Female, age 42, unknown 317.0
1889 Female, age 72, unknown 257.9
1851 Male, age 51, unknown 225.6
2241 Male, age 72, unknown 219.0
2409 Female, age 72, unknown 195.6
2665 Male, age 74, both hemispheres 194.0
2699 Male, age 18, unknown 171.9
2590 Female, age 75, unknown 156.4
2583 Male, age 75, right hemisphere 151.2
Superior colliculus
nTPM: 183.1
2668 Female, age 75, unknown 274.8
2087 Female, age 72, unknown 232.5
1796 Male, age 53, unknown 216.5
1895 Male, age 76, right hemisphere 205.8
2261 Male, age 18, unknown 195.7
1839 Male, age 51, unknown 178.0
2664 Male, age 75, both hemispheres 158.9
2587 Male, age 74, left hemisphere 143.6
1913 Female, age 42, unknown 122.4
1995 Male, age 72, unknown 102.6
Ventral tegmental area
nTPM: 193.1
2218 Male, age 76, both hemispheres 252.8
1915 Female, age 42, unknown 215.3
2410 Female, age 72, unknown 212.6
2223 Female, age 72, unknown 176.1
1942 Male, age 51, unknown 163.9
2021 Male, age 53, unknown 137.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 44.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 44.5
Samples: 183

Max nTPM: 366.9
Min nTPM: 6.0
Std nTPM: 54.7
Median nTPM: 20.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 366.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 358.7
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 239.9
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 197.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 186.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 176.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 154.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 151.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 147.3
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 143.3
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 141.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 52.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 52.8
FF:10158-103A5 76 years, female 52.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 256.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 179.0
Samples: 4

Max nTPM: 265.7
Min nTPM: 77.2
Sample A Female 265.7
Sample B Female 123.9
Sample C Male 249.0
Sample D Male 77.2
Midbrain
nTPM: 230.5
Samples: 4

Max nTPM: 410.6
Min nTPM: 107.3
Sample A Female 107.3
Sample B Female 143.3
Sample C Male 410.6
Sample D Male 260.7
Periaqueductal gray
nTPM: 158.8
Samples: 3

Max nTPM: 197.3
Min nTPM: 138.9
Sample B Female 138.9
Sample C Male 197.3
Sample D Male 140.1
Superior colliculi
nTPM: 256.7
Samples: 4

Max nTPM: 360.6
Min nTPM: 130.1
Sample A Female 261.8
Sample B Female 130.1
Sample C Male 360.6
Sample D Male 274.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 385.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 385.9
Samples: 4

Max nTPM: 399.0
Min nTPM: 370.3
Sample A Male 370.3
Sample B Male 398.2
Sample C Female 399.0
Sample D Female 375.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 14.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.6
1009 Antisense, RP_040227_01_08, Mouse strain C57BL/6J (56 days, male) 14.6
1010 Antisense, RP_040227_01_08, Mouse strain C57BL/6J (56 days, male) 12.2

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