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  • TISSUE

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  • PSMB7
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:122.8 nTPM
FANTOM5:126.9 Scaled Tags Per Million
Pig:102.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA052408
Glial cells Medium
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

122.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 122.8
Samples: 300

Max nTPM: 256.9
Min nTPM: 68.7
Std nTPM: 31.6
Median nTPM: 117.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 256.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 248.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 231.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 225.7
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 219.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 218.1
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 203.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 203.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 198.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 196.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 192.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 185.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 185.2
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 184.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 184.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 183.4
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 182.6
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 182.5
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 181.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 180.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 179.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 177.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 177.2
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 176.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 173.5
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 171.5
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 170.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 167.4
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 166.7
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 166.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 164.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 164.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 163.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 161.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 161.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 160.6
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 159.7
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 159.5
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 159.0
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 158.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 157.8
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 157.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 156.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 154.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 154.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 154.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 152.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 150.6
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 150.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 150.1
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 149.6
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 149.5
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 146.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 146.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 144.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 143.1
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 143.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 142.9
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 142.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 141.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 141.3
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 140.1
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 139.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 139.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 138.9
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 138.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 138.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 138.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 138.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 138.5
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 137.3
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 137.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 137.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 137.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 136.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 136.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 135.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 135.6
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 135.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 134.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 134.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 134.1
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 133.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 133.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 133.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 133.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 133.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 132.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 132.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 131.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 131.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 131.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 131.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 130.4
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 129.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 129.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 128.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 128.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 128.0
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 127.9
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 127.8
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 127.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 127.6
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 127.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 127.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 127.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 127.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 126.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 126.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 126.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 126.4
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 126.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 126.0
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 126.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 125.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 125.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 125.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 124.8
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 124.8
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 124.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 124.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 124.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 123.9
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 123.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 123.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 122.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 122.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 122.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 121.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 121.4
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 121.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 121.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 121.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 120.9
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 120.9
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 120.8
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 120.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 120.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 120.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 120.0
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 119.9
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 119.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 119.1
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 119.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 118.8
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 118.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 118.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 117.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 117.3
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 117.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 116.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 116.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 116.5
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 116.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 115.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 115.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 115.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 115.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 115.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 114.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 114.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 114.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 114.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 114.0
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 113.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 113.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 113.3
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 113.1
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 113.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 112.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 112.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 112.4
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 112.3
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 112.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 112.2
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 112.1
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 112.0
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 111.9
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 111.2
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 110.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 110.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 110.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 110.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 110.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 110.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 109.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 109.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 109.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 109.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 108.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 108.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 108.4
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 107.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 107.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 107.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 107.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 107.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 107.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 106.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 106.7
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 106.5
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 106.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 105.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 105.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 105.5
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 105.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 105.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 105.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 104.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 104.8
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 104.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 104.2
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 104.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 103.7
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 103.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 103.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 103.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 103.2
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 103.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 102.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 102.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 102.5
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 102.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 101.9
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 101.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 100.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 100.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 100.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 99.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 99.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 99.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 99.3
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 99.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 99.0
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 98.8
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 98.5
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 98.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 98.1
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 98.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 97.9
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 97.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 97.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 97.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 97.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 96.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 96.7
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 96.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 96.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 95.8
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 95.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 95.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 95.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 94.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 94.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 94.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 94.2
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 94.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 93.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 93.6
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 93.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 93.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 93.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 92.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 91.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 91.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 91.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 89.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 89.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 88.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 88.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 87.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 87.7
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 87.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 85.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 85.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 85.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 84.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 83.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 83.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 83.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 83.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 83.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 82.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 82.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 82.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 81.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 81.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 81.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 80.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 79.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 79.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 79.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 79.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 75.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 75.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 74.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 73.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 72.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 71.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 68.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

126.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 126.9
FF:10164-103B2 76 years, female 126.9

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

102.6
Pig sample Sample description nTPM
Caudate
nTPM: 102.6
Samples: 4

Max nTPM: 123.3
Min nTPM: 86.3
Sample A Female 103.1
Sample B Female 97.6
Sample C Male 123.3
Sample D Male 86.3

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