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  • ANP32B
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:123.1 nTPM
HPA Brain:129.2 nTPM
GTEx:123.1 nTPM
FANTOM5:113.7 Scaled Tags Per Million
Pig:58.4 nTPM
Mouse:58.2 nTPM
Allen mouse:0.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

129.2
Sample id Sample description nTPM
Amygdala
nTPM: 101.1
2695 Female, age 67, right hemisphere 170.2
2814 Male, age 76, right hemisphere 97.4
2514 Male, age 75, right hemisphere 81.8
2517 Female, age 94, left hemisphere 80.2
1987 Female, age 91, left hemisphere 76.0
Basal amygdala
nTPM: 95.3
2827 Female, age 67, right hemisphere 214.4
2685 Female, age 94, left hemisphere 80.8
2609 Male, age 75, right hemisphere 76.5
1955 Male, age 76, both hemispheres 74.6
2110 Male, age 80, left hemisphere 68.8
2243 Female, age 91, right hemisphere 56.5
Central amygdala
nTPM: 116.2
2826 Female, age 94, left hemisphere 247.5
2515 Male, age 75, right hemisphere 99.4
1905 Male, age 76, both hemispheres 81.7
2701 Female, age 91, right hemisphere 78.5
2239 Male, age 80, left hemisphere 74.0
Corticomedial amygdala
nTPM: 71.7
2535 Female, age 67, right hemisphere 131.6
2240 Male, age 76, both hemispheres 80.0
2428 Male, age 75, right hemisphere 68.5
2829 Male, age 80, left hemisphere 56.7
2242 Female, age 91, right hemisphere 47.9
2429 Female, age 94, left hemisphere 45.2
Lateral amygdala
nTPM: 129.2
2830 Female, age 67, right hemisphere 282.9
2534 Female, age 94, left hemisphere 129.0
2516 Male, age 75, right hemisphere 114.2
2256 Male, age 80, left hemisphere 101.1
1883 Male, age 76, both hemispheres 78.7
2255 Female, age 91, right hemisphere 69.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

123.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 123.1
Samples: 181

Max nTPM: 303.5
Min nTPM: 45.7
Std nTPM: 61.4
Median nTPM: 106.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 303.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 301.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 298.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 297.4
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 291.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 290.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 280.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 279.5
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 278.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 262.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 249.8
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 248.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 248.5
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 246.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 238.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 228.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 213.3
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 209.9
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 209.5
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 207.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 204.5
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 201.1
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 195.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 192.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 190.7
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 188.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 179.6
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 178.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 177.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 172.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 169.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 169.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 168.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 168.3
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 168.0
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 166.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 166.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 164.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 163.4
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 158.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 157.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 154.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 153.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 152.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 152.0
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 151.2
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 150.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 150.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 148.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 148.7
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 147.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 146.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 145.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 144.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 144.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 143.1
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 140.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 139.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 136.8
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 136.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 135.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 133.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 132.8
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 131.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 130.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 130.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 129.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 127.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 127.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 127.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 125.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 121.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 120.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 120.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 119.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 117.8
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 116.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 115.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 114.6
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 114.3
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 113.6
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 112.3
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 112.1
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 111.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 111.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 110.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 109.0
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 108.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 108.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 106.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 106.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 104.9
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 104.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 102.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 100.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 100.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 100.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 100.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 97.8
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 97.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 97.1
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 94.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 94.6
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 94.5
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 94.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 93.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 93.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 92.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 91.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 91.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 91.6
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 91.1
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 89.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 89.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 89.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 88.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 87.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 87.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 86.4
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 85.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 84.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 84.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 84.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 83.6
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 83.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 83.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 82.6
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 82.6
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 81.8
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 80.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 80.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 80.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 79.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 78.5
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 78.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 77.5
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 76.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 76.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 76.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 76.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 74.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 74.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 74.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 73.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 73.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 73.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 72.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 72.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 71.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 70.8
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 70.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 70.1
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 69.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 68.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 68.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 68.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 67.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 67.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 67.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 65.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 65.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 61.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 61.7
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 60.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 60.8
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 60.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 60.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 59.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 59.5
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 59.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 58.2
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 57.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 53.0
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 52.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 48.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 48.8
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 47.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 46.9
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 46.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 46.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 45.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

113.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 113.7
FF:10151-102I7 76 years, female 113.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

58.4
Pig sample Sample description nTPM
Amygdala
nTPM: 58.4
Samples: 4

Max nTPM: 79.5
Min nTPM: 43.1
Sample A Female 55.3
Sample B Female 79.5
Sample C Male 55.6
Sample D Male 43.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

58.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 58.2
Samples: 4

Max nTPM: 60.3
Min nTPM: 54.6
Sample A Male 58.1
Sample B Male 54.6
Sample C Female 59.8
Sample D Female 60.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.4
71574416 Antisense, RP_050915_03_F09, Mouse strain C57BL/6J (56 days, male) 0.4

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