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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:2074.0 nTPM
GTEx:2074.0 nTPM
FANTOM5:1407.5 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA006047
Squamous epithelial cells High



VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2074.0
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 2074.0
Samples: 170

Max nTPM: 6001.3
Min nTPM: 932.1
Std nTPM: 754.4
Median nTPM: 1889.1
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 6001.3
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 5580.8
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 4300.0
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 4113.2
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 4017.4
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 3947.1
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 3864.8
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 3842.7
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 3432.5
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 3408.0
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 3330.7
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 3108.1
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 3051.9
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 3023.5
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 2999.9
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 2998.2
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 2977.6
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 2878.1
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 2818.6
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 2791.0
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 2736.6
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 2734.8
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 2724.1
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 2676.6
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 2675.1
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 2671.9
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 2667.4
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 2645.9
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 2626.7
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 2592.5
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 2511.9
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 2511.8
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 2506.6
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 2476.0
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 2462.5
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 2453.1
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 2446.5
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 2429.7
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 2412.7
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 2400.3
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 2394.0
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 2380.2
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 2376.7
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 2351.6
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 2344.4
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 2333.1
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 2329.0
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 2305.2
GTEX-16NPV-2526-SM-6M483 50-59 years, female 2297.0
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 2283.2
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 2266.0
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 2263.8
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 2257.9
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 2254.3
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 2245.6
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 2236.5
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 2231.7
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 2204.7
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 2202.9
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 2184.4
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 2170.2
GTEX-S341-1226-SM-4AD5S 40-49 years, female 2166.8
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 2161.4
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 2161.1
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 2149.2
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 2124.0
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 2120.7
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 2117.0
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 2115.1
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 2106.2
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 2104.9
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 2069.5
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 2057.8
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 2047.0
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 2011.4
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 2009.7
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 1996.3
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 1982.0
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 1979.1
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 1958.0
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 1957.8
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 1927.2
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 1926.0
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 1921.9
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 1895.1
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 1883.2
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 1882.4
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 1874.2
GTEX-14PKU-1326-SM-6871B 40-49 years, female 1867.2
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 1866.5
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 1865.8
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 1857.1
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 1848.3
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 1816.3
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 1794.4
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 1791.8
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 1789.9
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 1783.8
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 1780.5
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 1775.2
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 1771.5
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 1762.1
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 1759.4
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 1756.3
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 1755.7
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 1751.0
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 1750.5
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 1741.8
GTEX-11I78-2026-SM-5987C 50-59 years, female 1739.5
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 1729.9
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 1721.5
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 1708.2
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 1685.8
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 1683.5
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 1681.5
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 1677.6
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 1656.3
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 1654.5
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 1640.4
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 1632.9
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 1632.6
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 1623.8
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 1618.9
GTEX-QCQG-1226-SM-48U23 50-59 years, female 1599.3
GTEX-1C475-0526-SM-793AC 40-49 years, female 1582.5
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 1579.2
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 1579.1
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 1576.5
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 1559.1
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 1554.3
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 1548.1
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 1532.6
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 1520.7
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 1514.0
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 1510.2
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 1504.3
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 1498.2
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 1490.6
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 1486.1
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 1471.4
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 1467.4
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 1452.8
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 1447.2
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 1444.6
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 1436.7
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 1435.3
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 1428.7
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 1424.6
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 1403.1
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 1401.3
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 1398.5
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 1389.1
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 1359.9
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 1342.2
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 1337.2
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 1327.9
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 1305.5
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 1301.0
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 1292.8
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 1290.1
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 1282.8
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 1254.4
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 1244.5
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 1175.6
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 1152.9
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 1126.6
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 1089.6
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 1053.1
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 1045.4
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 932.1
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1407.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 1407.5
FF:10204-103F6 68 years, female 1407.5

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