MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:98.4 nTPM
HPA Brain:75.7 nTPM
GTEx:98.4 nTPM
FANTOM5:51.2 Scaled Tags Per Million
Pig:86.2 nTPM
Mouse:100.7 nTPM
Allen mouse:8.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 75.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 59.3
1827 Male, age 72, unknown 69.3
2411 Female, age 72, unknown 68.9
2586 Male, age 75, left hemisphere 66.1
2019 Male, age 18, unknown 62.2
1870 Female, age 42, unknown 62.1
2219 Male, age 76, both hemispheres 59.9
2828 Female, age 72, unknown 54.2
1833 Male, age 53, unknown 53.4
1830 Male, age 51, unknown 48.8
2666 Male, age 74, left hemisphere 48.3
Dorsal raphe nucleus
nTPM: 69.3
2298 Female, age 72, unknown 87.3
2047 Male, age 72, unknown 80.2
2750 Male, age 76, both hemispheres 64.2
1828 Male, age 53, unknown 63.9
2016 Female, age 72, unknown 50.8
Inferior colliculus
nTPM: 60.5
2097 Female, age 72, unknown 68.8
1890 Male, age 53, unknown 61.1
1848 Female, age 42, unknown 58.3
2849 Male, age 72, unknown 53.9
Median raphe nucleus
nTPM: 69.3
2220 Male, age 76, midline 69.3
Periaquaductal grey, anterior
nTPM: 65.1
1947 Male, age 18, unknown 70.0
1795 Male, age 51, unknown 64.7
2502 Female, age 75, unknown 60.7
Periaquaductal grey, dorsal
nTPM: 55.4
1840 Male, age 53, unknown 63.2
2464 Female, age 72, unknown 54.3
1831 Male, age 72, unknown 52.3
2850 Male, age 76, both hemispheres 52.0
Periaquaductal grey, lateral
nTPM: 52.3
2272 Male, age 74, both hemispheres 58.1
2053 Male, age 18, unknown 52.4
2140 Male, age 76, both hemispheres 46.5
Pretectal area
nTPM: 65.9
1816 Male, age 51, unknown 79.5
2007 Male, age 72, unknown 77.1
1817 Female, age 42, unknown 72.8
2224 Female, age 72, unknown 70.0
2667 Female, age 75, unknown 70.0
1944 Female, age 72, unknown 69.9
2273 Male, age 74, both hemispheres 64.5
1815 Male, age 53, unknown 64.1
2825 Male, age 18, unknown 60.1
2407 Male, age 75, both hemispheres 50.5
2316 Male, age 76, right hemisphere 46.8
Red nucleus
nTPM: 57.3
1821 Female, age 72, unknown 76.0
1904 Male, age 53, unknown 59.9
2584 Male, age 75, left hemisphere 58.1
2785 Male, age 18, unknown 57.1
1865 Male, age 51, unknown 56.8
2725 Female, age 75, unknown 56.2
2588 Male, age 74, left hemisphere 55.3
2769 Male, age 72, unknown 55.2
2503 Female, age 72, unknown 54.8
2227 Male, age 72, unknown 54.5
1954 Female, age 42, unknown 54.0
2823 Male, age 76, right hemisphere 49.8
Substantia nigra
nTPM: 75.7
1916 Female, age 42, unknown 92.3
1851 Male, age 51, unknown 91.6
1941 Male, age 53, unknown 80.3
2409 Female, age 72, unknown 78.3
1889 Female, age 72, unknown 76.8
2241 Male, age 72, unknown 73.3
2665 Male, age 74, both hemispheres 73.0
2699 Male, age 18, unknown 65.7
2590 Female, age 75, unknown 63.3
2583 Male, age 75, right hemisphere 62.1
Superior colliculus
nTPM: 59.9
2668 Female, age 75, unknown 71.4
1796 Male, age 53, unknown 65.6
2261 Male, age 18, unknown 64.4
1895 Male, age 76, right hemisphere 63.4
2587 Male, age 74, left hemisphere 62.7
2087 Female, age 72, unknown 60.5
2664 Male, age 75, both hemispheres 57.0
1839 Male, age 51, unknown 53.9
1913 Female, age 42, unknown 53.1
1995 Male, age 72, unknown 47.4
Ventral tegmental area
nTPM: 70.2
2410 Female, age 72, unknown 87.6
1915 Female, age 42, unknown 79.1
2218 Male, age 76, both hemispheres 70.0
2223 Female, age 72, unknown 64.0
1942 Male, age 51, unknown 62.6
2021 Male, age 53, unknown 57.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 98.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 98.4
Samples: 183

Max nTPM: 216.9
Min nTPM: 50.9
Std nTPM: 28.6
Median nTPM: 93.0
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 216.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 186.9
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 173.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 173.0
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 172.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 166.0
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 165.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 164.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 164.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 157.5
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 154.9
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 51.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 51.2
FF:10158-103A5 76 years, female 51.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 86.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 78.5
Samples: 4

Max nTPM: 110.6
Min nTPM: 57.9
Sample A Female 110.6
Sample B Female 57.9
Sample C Male 84.6
Sample D Male 60.7
Midbrain
nTPM: 85.6
Samples: 4

Max nTPM: 93.9
Min nTPM: 76.1
Sample A Female 87.2
Sample B Female 76.1
Sample C Male 93.9
Sample D Male 85.0
Periaqueductal gray
nTPM: 66.7
Samples: 3

Max nTPM: 77.1
Min nTPM: 60.0
Sample B Female 62.9
Sample C Male 77.1
Sample D Male 60.0
Superior colliculi
nTPM: 86.2
Samples: 4

Max nTPM: 103.1
Min nTPM: 61.0
Sample A Female 103.1
Sample B Female 61.0
Sample C Male 96.1
Sample D Male 84.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 100.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 100.7
Samples: 4

Max nTPM: 111.5
Min nTPM: 94.4
Sample A Male 111.5
Sample B Male 99.6
Sample C Female 94.4
Sample D Female 97.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 8.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.3
69174493 Antisense, RP_050329_02_D09, Mouse strain C57BL/6J (56 days, male) 8.3

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo