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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:596.1 nTPM
HPA Brain:420.5 nTPM
GTEx:596.1 nTPM
FANTOM5:477.1 Scaled Tags Per Million
Pig:379.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

420.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 384.3
1981 Female, age 72, midline 542.1
2048 Male, age 55, midline 404.1
2816 Male, age 47, midline 374.1
2194 Female, age 79, both hemispheres 327.2
2565 Male, age 75, midline 273.7
Cervical spinal cord, dorsal horn
nTPM: 420.5
2296 Male, age 66, both hemispheres 586.4
2173 Female, age 72, unknown 554.8
2069 Male, age 47, both hemispheres 384.2
2721 Male, age 90, both hemispheres 367.3
1877 Male, age 55, unknown 366.9
2297 Male, age 75, both hemispheres 263.1
Cervical spinal cord, ventral horn
nTPM: 370.3
2098 Female, age 72, unknown 710.7
2068 Male, age 55, unknown 318.7
2480 Male, age 75, both hemispheres 302.6
2809 Male, age 90, both hemispheres 302.2
2295 Male, age 66, both hemispheres 301.1
2820 Female, age 79, both hemispheres 286.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

596.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 596.1
Samples: 204

Max nTPM: 1858.3
Min nTPM: 183.5
Std nTPM: 245.6
Median nTPM: 568.8
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 1858.3
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 1582.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1291.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1275.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1221.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1163.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1114.1
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 1104.7
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 1053.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1010.9
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 1008.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 997.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 985.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 979.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 978.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 960.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 949.0
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 948.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 944.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 936.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 922.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 878.7
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 871.9
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 869.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 868.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 863.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 849.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 841.6
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 821.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 817.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 812.4
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 812.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 807.8
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 806.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 787.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 755.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 749.0
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 747.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 745.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 743.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 739.3
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 739.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 738.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 733.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 731.3
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 730.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 726.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 721.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 715.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 706.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 706.4
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 705.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 704.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 702.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 698.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 692.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 691.2
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 690.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 689.0
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 685.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 684.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 683.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 676.6
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 672.5
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 667.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 666.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 664.3
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 658.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 657.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 656.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 655.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 653.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 651.1
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 646.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 644.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 638.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 627.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 624.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 624.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 622.0
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 617.2
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 611.2
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 603.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 602.3
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 600.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 600.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 599.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 599.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 598.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 596.8
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 593.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 593.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 591.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 582.4
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 581.8
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 580.9
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 577.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 576.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 574.6
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 569.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 569.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 569.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 568.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 563.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 563.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 562.8
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 558.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 557.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 556.9
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 556.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 551.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 546.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 542.9
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 539.9
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 537.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 537.4
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 530.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 527.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 524.2
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 520.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 517.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 517.1
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 516.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 516.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 511.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 510.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 507.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 506.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 504.0
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 501.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 500.3
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 498.9
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 495.3
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 495.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 492.4
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 490.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 483.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 482.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 480.1
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 477.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 474.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 473.9
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 463.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 463.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 461.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 460.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 459.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 459.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 457.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 457.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 454.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 445.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 443.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 443.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 437.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 430.5
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 423.2
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 419.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 408.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 404.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 402.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 401.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 401.3
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 398.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 395.4
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 391.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 386.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 383.1
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 382.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 379.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 379.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 357.0
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 354.4
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 353.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 350.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 346.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 341.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 337.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 333.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 330.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 329.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 323.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 317.8
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 306.5
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 305.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 300.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 299.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 296.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 286.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 277.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 269.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 266.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 265.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 263.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 249.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 247.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 244.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 244.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 237.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 225.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 222.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 203.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 201.2
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 183.5
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

477.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 477.1
FF:10181-103D1 60 years, female 550.5
FF:10159-103A6 76 years, female 403.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

379.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 245.0
Samples: 4

Max nTPM: 319.9
Min nTPM: 214.0
Sample A Female 214.7
Sample B Female 214.0
Sample C Male 319.9
Sample D Male 231.2
Ventral spinal cord
nTPM: 379.6
Samples: 4

Max nTPM: 501.1
Min nTPM: 296.3
Sample A Female 296.3
Sample B Female 347.1
Sample C Male 501.1
Sample D Male 373.8

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