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  • MTCH1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:246.0 nTPM
HPA Brain:258.4 nTPM
GTEx:246.0 nTPM
FANTOM5:106.3 Scaled Tags Per Million
Pig:176.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

258.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 235.6
2565 Male, age 75, midline 291.4
1981 Female, age 72, midline 251.6
2194 Female, age 79, both hemispheres 246.4
2816 Male, age 47, midline 215.8
2048 Male, age 55, midline 172.9
Cervical spinal cord, dorsal horn
nTPM: 258.4
2296 Male, age 66, both hemispheres 318.9
2173 Female, age 72, unknown 298.1
2069 Male, age 47, both hemispheres 261.4
1877 Male, age 55, unknown 240.6
2297 Male, age 75, both hemispheres 236.5
2721 Male, age 90, both hemispheres 194.7
Cervical spinal cord, ventral horn
nTPM: 243.4
2480 Male, age 75, both hemispheres 311.8
2068 Male, age 55, unknown 246.8
2809 Male, age 90, both hemispheres 242.1
2295 Male, age 66, both hemispheres 225.9
2820 Female, age 79, both hemispheres 219.8
2098 Female, age 72, unknown 214.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

246.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 246.0
Samples: 204

Max nTPM: 416.5
Min nTPM: 135.5
Std nTPM: 52.0
Median nTPM: 235.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 416.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 396.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 392.6
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 386.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 379.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 377.0
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 360.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 355.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 353.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 343.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 341.5
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 340.8
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 339.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 332.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 332.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 326.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 325.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 323.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 322.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 320.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 314.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 312.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 312.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 310.4
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 309.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 305.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 305.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 302.4
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 299.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 298.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 298.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 298.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 297.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 296.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 296.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 296.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 295.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 294.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 294.5
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 294.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 293.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 291.3
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 289.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 286.8
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 284.7
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 281.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 281.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 280.9
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 279.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 279.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 278.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 273.9
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 273.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 270.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 270.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 270.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 269.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 268.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 268.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 267.9
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 267.4
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 264.9
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 264.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 264.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 263.6
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 263.1
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 260.4
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 256.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 255.9
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 255.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 255.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 254.9
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 253.5
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 253.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 253.3
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 252.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 251.8
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 251.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 250.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 249.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 247.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 247.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 247.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 246.9
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 246.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 245.4
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 245.2
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 244.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 244.2
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 243.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 243.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 243.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 243.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 242.5
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 242.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 241.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 240.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 239.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 238.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 237.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 236.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 235.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 235.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 235.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 234.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 234.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 234.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 234.3
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 234.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 234.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 234.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 234.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 233.6
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 233.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 232.9
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 232.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 231.8
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 230.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 230.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 230.6
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 230.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 229.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 229.4
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 228.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 227.7
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 227.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 226.3
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 226.3
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 226.1
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 225.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 225.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 223.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 223.2
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 222.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 221.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 219.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 219.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 219.0
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 218.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 218.7
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 218.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 218.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 217.4
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 216.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 215.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 214.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 214.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 214.0
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 213.4
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 213.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 212.9
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 212.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 212.2
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 212.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 211.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 210.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 210.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 209.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 208.6
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 207.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 206.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 205.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 205.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 204.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 204.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 203.6
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 202.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 202.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 201.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 199.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 199.0
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 198.0
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 198.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 195.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 194.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 193.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 192.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 190.7
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 188.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 188.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 187.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 187.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 185.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 185.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 183.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 183.7
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 181.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 180.5
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 180.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 178.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 176.5
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 175.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 175.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 174.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 173.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 168.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 164.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 164.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 159.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 157.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 156.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 147.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 146.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 135.5
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

106.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 106.3
FF:10181-103D1 60 years, female 117.2
FF:10159-103A6 76 years, female 95.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

176.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 176.4
Samples: 4

Max nTPM: 207.9
Min nTPM: 147.5
Sample A Female 207.9
Sample B Female 147.5
Sample C Male 178.9
Sample D Male 171.1
Ventral spinal cord
nTPM: 176.6
Samples: 4

Max nTPM: 184.1
Min nTPM: 167.0
Sample A Female 184.1
Sample B Female 177.0
Sample C Male 178.1
Sample D Male 167.0

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