HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.1 nTPM
HPA Brain:49.6 nTPM
GTEx:11.1 nTPM
FANTOM5:38.6 Scaled Tags Per Million
Pig:31.0 nTPM
Mouse:10.7 nTPM
Allen mouse:0.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 49.6
Sample id Sample description nTPM
Hippocampus
nTPM: 27.5
2148 Female, age 91, left hemisphere 46.8
1898 Male, age 80, left hemisphere 36.3
2621 Female, age 67, right hemisphere 25.4
1855 Male, age 76, left hemisphere 23.7
1911 Female, age 85, right hemisphere 18.3
2529 Female, age 94, left hemisphere 14.6
Dentate gyrus
nTPM: 49.6
2531 Female, age 67, both hemispheres 82.0
2528 Male, age 74, both hemispheres 73.6
1927 Female, age 91, both hemispheres 60.5
2530 Female, age 94, left hemisphere 37.6
2246 Female, age 85, both hemispheres 32.5
2010 Male, age 76, both hemispheres 11.6
Entorhinal gyrus
nTPM: 18.8
1938 Female, age 85, left hemisphere 21.3
2764 Male, age 80, right hemisphere 21.2
1787 Male, age 76, left hemisphere 18.6
2686 Male, age 75, right hemisphere 18.4
2613 Female, age 94, left hemisphere 17.2
2117 Female, age 91, right hemisphere 16.0
Hippocampus, CA1
nTPM: 21.0
1873 Female, age 85, both hemispheres 42.4
2045 Male, age 76, both hemispheres 37.9
2527 Male, age 74, both hemispheres 12.8
2082 Female, age 91, right hemisphere 7.4
2749 Male, age 80, left hemisphere 4.3
Hippocampus, CA2
nTPM: 20.6
1892 Male, age 76, both hemispheres 34.0
1940 Female, age 85, left hemisphere 27.2
2437 Female, age 94, left hemisphere 24.4
1963 Male, age 80, left hemisphere 14.5
2113 Female, age 91, right hemisphere 13.5
2249 Male, age 74, both hemispheres 10.3
Hippocampus, CA3
nTPM: 40.2
2861 Female, age 67, both hemispheres 103.9
2620 Female, age 94, left hemisphere 56.3
1867 Male, age 76, both hemispheres 26.5
1891 Female, age 85, both hemispheres 25.5
2436 Male, age 74, both hemispheres 15.0
2137 Male, age 80, left hemisphere 13.8
Parahippocampal cortex
nTPM: 25.3
1850 Male, age 80, both hemispheres 37.7
2532 Female, age 72, left hemisphere 30.7
2622 Female, age 67, right hemisphere 30.2
1933 Female, age 85, both hemispheres 26.0
2693 Female, age 94, both hemispheres 26.0
2692 Male, age 74, both hemispheres 21.9
1990 Female, age 91, right hemisphere 21.6
2245 Female, age 91, both hemispheres 21.6
2250 Female, age 67, right hemisphere 21.0
2018 Male, age 76, both hemispheres 16.4
Perirhinal gyrus
nTPM: 32.0
1841 Female, age 85, right hemisphere 44.9
1794 Male, age 80, right hemisphere 38.3
2848 Male, age 76, right hemisphere 29.5
1847 Female, age 91, left hemisphere 26.4
2521 Female, age 94, right hemisphere 21.1
Subiculum
nTPM: 16.0
2729 Female, age 91, right hemisphere 39.1
2619 Male, age 74, both hemispheres 18.6
1977 Female, age 85, both hemispheres 12.9
2438 Female, age 94, left hemisphere 10.6
1901 Male, age 80, both hemispheres 8.3
2042 Male, age 76, both hemispheres 6.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 11.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 11.1
Samples: 255

Max nTPM: 112.1
Min nTPM: 0.4
Std nTPM: 14.0
Median nTPM: 5.8
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 112.1
GTEX-1LKK1-0011-R1b-SM-F2TAF 50-59 years, female 84.5
GTEX-12ZZZ-0011-R1a-SM-GIN8I 60-69 years, male 71.9
GTEX-117XS-0011-R1b-SM-GJ3PQ 60-69 years, male 62.4
GTEX-1RQEC-0011-R1b-SM-F2I2E 60-69 years, male 57.3
GTEX-1PPGY-0011-R1b-SM-G8LN3 60-69 years, male 57.1
GTEX-11OF3-0011-R1b-SM-H65ZT 60-69 years, male 45.8
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 40.8
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 39.9
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 39.9
GTEX-1MCQQ-0011-R1a-SM-F341G 60-69 years, male 39.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 38.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 38.6
FF:10169-103B7 60 years, female 43.6
FF:10153-102I9 76 years, female 33.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 31.0
Pig sample Sample description nTPM
Subiculum
nTPM: 14.6
Samples: 4

Max nTPM: 24.2
Min nTPM: 7.5
Sample A Female 14.2
Sample B Female 12.4
Sample C Male 7.5
Sample D Male 24.2
Dorsal hippocampus
nTPM: 6.5
Samples: 4

Max nTPM: 8.4
Min nTPM: 4.3
Sample A Female 6.0
Sample B Female 7.3
Sample C Male 4.3
Sample D Male 8.4
Entorhinal cortex
nTPM: 31.0
Samples: 4

Max nTPM: 34.5
Min nTPM: 26.0
Sample A Female 32.1
Sample B Female 34.5
Sample C Male 31.2
Sample D Male 26.0
Ventral hippocampus
nTPM: 10.7
Samples: 4

Max nTPM: 13.9
Min nTPM: 6.2
Sample A Female 13.9
Sample B Female 9.8
Sample C Male 12.8
Sample D Male 6.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 10.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 10.7
Samples: 4

Max nTPM: 13.0
Min nTPM: 9.1
Sample A Male 10.5
Sample B Male 10.1
Sample C Female 13.0
Sample D Female 9.1
Hippocampal formation
nTPM: 4.7
Samples: 4

Max nTPM: 6.9
Min nTPM: 2.1
Sample A Male 6.3
Sample B Male 3.4
Sample C Female 2.1
Sample D Female 6.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.2
2707 Antisense, RP_040507_01_F11, Mouse strain C57BL/6J (56 days, male) 0.2
2708 Antisense, RP_040507_01_F11, Mouse strain C57BL/6J (56 days, male) 0.2

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