MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.7 nTPM
HPA Brain:10.4 nTPM
GTEx:11.7 nTPM
FANTOM5:18.5 Scaled Tags Per Million
Pig:35.9 nTPM
Mouse:9.0 nTPM
Allen mouse:1.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 10.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 7.1
2019 Male, age 18, unknown 8.8
2828 Female, age 72, unknown 8.2
2666 Male, age 74, left hemisphere 7.9
1833 Male, age 53, unknown 7.7
1830 Male, age 51, unknown 7.1
1870 Female, age 42, unknown 7.0
2411 Female, age 72, unknown 6.9
1827 Male, age 72, unknown 6.5
2586 Male, age 75, left hemisphere 6.4
2219 Male, age 76, both hemispheres 4.8
Dorsal raphe nucleus
nTPM: 10.0
2047 Male, age 72, unknown 10.8
2016 Female, age 72, unknown 10.5
2750 Male, age 76, both hemispheres 9.9
2298 Female, age 72, unknown 9.4
1828 Male, age 53, unknown 9.3
Inferior colliculus
nTPM: 7.0
2097 Female, age 72, unknown 8.1
1848 Female, age 42, unknown 7.5
1890 Male, age 53, unknown 7.4
2849 Male, age 72, unknown 4.8
Median raphe nucleus
nTPM: 9.7
2220 Male, age 76, midline 9.7
Periaquaductal grey, anterior
nTPM: 6.7
1795 Male, age 51, unknown 7.3
1947 Male, age 18, unknown 6.7
2502 Female, age 75, unknown 6.2
Periaquaductal grey, dorsal
nTPM: 7.6
2850 Male, age 76, both hemispheres 8.3
1831 Male, age 72, unknown 8.0
1840 Male, age 53, unknown 7.2
2464 Female, age 72, unknown 6.8
Periaquaductal grey, lateral
nTPM: 8.5
2272 Male, age 74, both hemispheres 9.1
2053 Male, age 18, unknown 8.6
2140 Male, age 76, both hemispheres 7.7
Pretectal area
nTPM: 7.6
1817 Female, age 42, unknown 8.9
2316 Male, age 76, right hemisphere 8.9
2224 Female, age 72, unknown 8.6
2273 Male, age 74, both hemispheres 8.4
1944 Female, age 72, unknown 8.2
1816 Male, age 51, unknown 7.8
1815 Male, age 53, unknown 7.4
2825 Male, age 18, unknown 7.3
2007 Male, age 72, unknown 7.0
2667 Female, age 75, unknown 5.8
2407 Male, age 75, both hemispheres 5.6
Red nucleus
nTPM: 9.1
2503 Female, age 72, unknown 10.7
2725 Female, age 75, unknown 10.4
1821 Female, age 72, unknown 10.0
1865 Male, age 51, unknown 9.8
1904 Male, age 53, unknown 9.7
2769 Male, age 72, unknown 9.4
1954 Female, age 42, unknown 9.1
2823 Male, age 76, right hemisphere 8.7
2785 Male, age 18, unknown 8.5
2227 Male, age 72, unknown 8.4
2588 Male, age 74, left hemisphere 7.4
2584 Male, age 75, left hemisphere 7.3
Substantia nigra
nTPM: 10.4
2665 Male, age 74, both hemispheres 13.4
2699 Male, age 18, unknown 11.9
2409 Female, age 72, unknown 11.6
2590 Female, age 75, unknown 11.2
2241 Male, age 72, unknown 10.9
1851 Male, age 51, unknown 10.7
1916 Female, age 42, unknown 10.4
2583 Male, age 75, right hemisphere 8.5
1889 Female, age 72, unknown 8.1
1941 Male, age 53, unknown 6.9
Superior colliculus
nTPM: 7.4
1995 Male, age 72, unknown 10.1
2587 Male, age 74, left hemisphere 10.0
1796 Male, age 53, unknown 8.7
2668 Female, age 75, unknown 8.0
1913 Female, age 42, unknown 7.3
2087 Female, age 72, unknown 7.0
1895 Male, age 76, right hemisphere 6.3
1839 Male, age 51, unknown 6.2
2261 Male, age 18, unknown 5.4
2664 Male, age 75, both hemispheres 5.3
Ventral tegmental area
nTPM: 8.9
2021 Male, age 53, unknown 10.1
2223 Female, age 72, unknown 9.6
1915 Female, age 42, unknown 9.4
2410 Female, age 72, unknown 8.2
1942 Male, age 51, unknown 8.0
2218 Male, age 76, both hemispheres 8.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 11.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.7
Samples: 183

Max nTPM: 61.7
Min nTPM: 2.2
Std nTPM: 7.3
Median nTPM: 9.7
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 61.7
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 35.9
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 33.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 30.4
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 29.3
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 28.4
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 27.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 26.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 26.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 25.7
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 25.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 18.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.5
FF:10158-103A5 76 years, female 18.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 35.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 32.1
Samples: 4

Max nTPM: 43.5
Min nTPM: 25.4
Sample A Female 28.3
Sample B Female 31.3
Sample C Male 25.4
Sample D Male 43.5
Midbrain
nTPM: 32.0
Samples: 4

Max nTPM: 41.1
Min nTPM: 27.8
Sample A Female 41.1
Sample B Female 30.3
Sample C Male 27.8
Sample D Male 28.7
Periaqueductal gray
nTPM: 27.0
Samples: 3

Max nTPM: 30.1
Min nTPM: 25.2
Sample B Female 30.1
Sample C Male 25.2
Sample D Male 25.6
Superior colliculi
nTPM: 35.9
Samples: 4

Max nTPM: 45.9
Min nTPM: 31.0
Sample A Female 45.9
Sample B Female 32.5
Sample C Male 31.0
Sample D Male 34.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 9.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.0
Samples: 4

Max nTPM: 10.2
Min nTPM: 7.8
Sample A Male 10.2
Sample B Male 9.0
Sample C Female 7.8
Sample D Female 9.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
74047907 Antisense, RP_051214_02_C04, Mouse strain C57BL/6J (56 days, male) 2.0
393195 Antisense, RP_040804_02_C03, Mouse strain C57BL/6J (56 days, male) 0.2

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