MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:53.1 nTPM
HPA Brain:99.1 nTPM
GTEx:53.1 nTPM
FANTOM5:101.2 Scaled Tags Per Million
Pig:172.1 nTPM
Mouse:126.4 nTPM
Allen mouse:9.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 99.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 81.6
2019 Male, age 18, unknown 105.2
1827 Male, age 72, unknown 89.2
1870 Female, age 42, unknown 87.5
2411 Female, age 72, unknown 86.5
1833 Male, age 53, unknown 78.4
2828 Female, age 72, unknown 77.4
2666 Male, age 74, left hemisphere 77.2
1830 Male, age 51, unknown 75.8
2586 Male, age 75, left hemisphere 70.6
2219 Male, age 76, both hemispheres 68.5
Dorsal raphe nucleus
nTPM: 84.0
2298 Female, age 72, unknown 95.5
1828 Male, age 53, unknown 88.3
2750 Male, age 76, both hemispheres 80.5
2047 Male, age 72, unknown 79.3
2016 Female, age 72, unknown 76.2
Inferior colliculus
nTPM: 87.8
2097 Female, age 72, unknown 105.8
1890 Male, age 53, unknown 88.6
1848 Female, age 42, unknown 85.1
2849 Male, age 72, unknown 71.7
Median raphe nucleus
nTPM: 77.0
2220 Male, age 76, midline 77.0
Periaquaductal grey, anterior
nTPM: 86.3
1947 Male, age 18, unknown 90.0
2502 Female, age 75, unknown 88.5
1795 Male, age 51, unknown 80.5
Periaquaductal grey, dorsal
nTPM: 77.5
1831 Male, age 72, unknown 84.7
1840 Male, age 53, unknown 77.5
2464 Female, age 72, unknown 74.3
2850 Male, age 76, both hemispheres 73.6
Periaquaductal grey, lateral
nTPM: 72.3
2272 Male, age 74, both hemispheres 79.3
2053 Male, age 18, unknown 75.4
2140 Male, age 76, both hemispheres 62.3
Pretectal area
nTPM: 99.1
1816 Male, age 51, unknown 122.9
1817 Female, age 42, unknown 122.6
1944 Female, age 72, unknown 120.6
2007 Male, age 72, unknown 120.3
1815 Male, age 53, unknown 111.0
2667 Female, age 75, unknown 90.8
2273 Male, age 74, both hemispheres 89.4
2224 Female, age 72, unknown 85.9
2407 Male, age 75, both hemispheres 83.7
2825 Male, age 18, unknown 72.7
2316 Male, age 76, right hemisphere 70.0
Red nucleus
nTPM: 82.6
1821 Female, age 72, unknown 105.2
2785 Male, age 18, unknown 90.2
2725 Female, age 75, unknown 89.9
1954 Female, age 42, unknown 83.1
2823 Male, age 76, right hemisphere 82.8
1865 Male, age 51, unknown 81.7
2503 Female, age 72, unknown 81.4
1904 Male, age 53, unknown 80.6
2584 Male, age 75, left hemisphere 76.8
2227 Male, age 72, unknown 74.4
2769 Male, age 72, unknown 72.5
2588 Male, age 74, left hemisphere 72.2
Substantia nigra
nTPM: 97.7
1889 Female, age 72, unknown 113.4
2241 Male, age 72, unknown 110.1
1916 Female, age 42, unknown 105.5
1941 Male, age 53, unknown 100.4
1851 Male, age 51, unknown 98.6
2409 Female, age 72, unknown 96.0
2665 Male, age 74, both hemispheres 95.3
2583 Male, age 75, right hemisphere 90.5
2590 Female, age 75, unknown 87.8
2699 Male, age 18, unknown 79.9
Superior colliculus
nTPM: 86.5
2087 Female, age 72, unknown 101.0
2587 Male, age 74, left hemisphere 99.9
2668 Female, age 75, unknown 90.9
2261 Male, age 18, unknown 89.8
1913 Female, age 42, unknown 82.6
1895 Male, age 76, right hemisphere 81.7
1995 Male, age 72, unknown 81.6
1796 Male, age 53, unknown 80.6
1839 Male, age 51, unknown 80.1
2664 Male, age 75, both hemispheres 77.0
Ventral tegmental area
nTPM: 84.0
2410 Female, age 72, unknown 93.8
1915 Female, age 42, unknown 87.6
2218 Male, age 76, both hemispheres 84.3
2223 Female, age 72, unknown 83.1
1942 Male, age 51, unknown 80.8
2021 Male, age 53, unknown 74.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 53.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 53.1
Samples: 183

Max nTPM: 93.9
Min nTPM: 27.9
Std nTPM: 12.4
Median nTPM: 50.8
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 93.9
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 92.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 90.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 86.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 82.4
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 82.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 79.0
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 78.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 77.8
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 77.5
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 77.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 101.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 101.2
FF:10158-103A5 76 years, female 101.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 172.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 168.3
Samples: 4

Max nTPM: 195.5
Min nTPM: 138.4
Sample A Female 195.5
Sample B Female 158.3
Sample C Male 180.9
Sample D Male 138.4
Midbrain
nTPM: 172.1
Samples: 4

Max nTPM: 195.2
Min nTPM: 159.3
Sample A Female 195.2
Sample B Female 172.4
Sample C Male 159.3
Sample D Male 161.5
Periaqueductal gray
nTPM: 157.7
Samples: 3

Max nTPM: 181.1
Min nTPM: 139.2
Sample B Female 152.7
Sample C Male 181.1
Sample D Male 139.2
Superior colliculi
nTPM: 153.3
Samples: 4

Max nTPM: 187.5
Min nTPM: 118.6
Sample A Female 187.5
Sample B Female 118.6
Sample C Male 154.2
Sample D Male 152.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 126.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 126.4
Samples: 4

Max nTPM: 133.6
Min nTPM: 120.6
Sample A Male 120.6
Sample B Male 128.9
Sample C Female 133.6
Sample D Female 122.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 9.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.8
67 Antisense, RP_040324_01_F02, Mouse strain C57BL/6J (56 days, male) 9.8
68 Antisense, RP_040324_01_F02, Mouse strain C57BL/6J (56 days, male) 7.5

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