BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:36.9 nTPM
HPA Brain:47.3 nTPM
GTEx:36.9 nTPM
FANTOM5:137.5 Scaled Tags Per Million
Pig:50.9 nTPM
Mouse:25.6 nTPM
Allen mouse:12.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 47.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 47.3
2289 Male, age 61, right hemisphere 76.2
2290 Female, age 72, unknown 59.1
2288 Male, age 75, left hemisphere 56.3
1857 Female, age 85, left hemisphere 45.1
2481 Female, age 94, left hemisphere 44.7
2846 Female, age 79, unknown 40.8
1854 Male, age 80, left hemisphere 34.4
1781 Male, age 74, unknown 21.9
Globus pallidus, externus
nTPM: 12.0
2646 Male, age 61, right hemisphere 21.0
1996 Male, age 80, right hemisphere 12.7
2395 Male, age 75, both hemispheres 10.0
2567 Female, age 72, unknown 8.8
2772 Female, age 79, unknown 7.6
Globus pallidus, internus
nTPM: 12.2
2483 Female, age 94, right hemisphere 22.0
2287 Male, age 75, right hemisphere 16.3
1818 Male, age 74, unknown 11.7
2037 Male, age 80, right hemisphere 10.7
2566 Female, age 72, unknown 10.6
2111 Female, age 85, right hemisphere 7.6
2778 Female, age 91, both hemispheres 6.6
Nucleus accumbens
nTPM: 42.4
2824 Male, age 61, right hemisphere 65.6
2286 Male, age 75, left hemisphere 50.0
1806 Female, age 85, left hemisphere 47.0
1783 Male, age 74, unknown 46.3
2698 Female, age 72, unknown 39.0
1856 Female, age 91, right hemisphere 35.1
2732 Male, age 80, right hemisphere 32.8
2391 Female, age 94, left hemisphere 23.3
Nucleus basalis of Meynert
nTPM: 27.6
2484 Female, age 94, left hemisphere 35.5
2393 Male, age 80, right hemisphere 32.4
2569 Male, age 61, both hemispheres 25.0
2821 Male, age 75, both hemispheres 17.6
Nucleus of the diagonal band
nTPM: 15.8
1979 Male, age 74, unknown 46.1
1812 Female, age 91, both hemispheres 11.9
2195 Female, age 85, both hemispheres 10.5
2775 Male, age 80, right hemisphere 6.5
2029 Male, age 61, right hemisphere 4.1
Putamen
nTPM: 36.1
1838 Male, age 80, right hemisphere 46.3
2489 Female, age 72, unknown 42.9
2466 Female, age 79, unknown 41.8
1829 Male, age 74, unknown 40.3
1937 Female, age 91, right hemisphere 33.2
2482 Female, age 94, left hemisphere 30.7
2647 Male, age 75, left hemisphere 17.5
Septal nuclei
nTPM: 17.1
2199 Male, age 80, right hemisphere 33.1
2394 Male, age 61, left hemisphere 30.4
2059 Female, age 85, both hemispheres 17.5
2629 Female, age 94, right hemisphere 11.4
2009 Female, age 91, both hemispheres 11.0
1960 Male, age 74, unknown 9.5
2031 Female, age 72, unknown 6.8
Stria terminalis, bed nucleus
nTPM: 13.1
2201 Male, age 74, unknown 18.9
2486 Female, age 94, both hemispheres 14.7
1974 Female, age 91, both hemispheres 5.8

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 36.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 30.1
Samples: 300

Max nTPM: 60.9
Min nTPM: 0.2
Std nTPM: 10.6
Median nTPM: 30.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 60.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 60.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 57.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 55.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 55.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 54.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 52.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 51.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 51.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 50.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 50.1
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 36.9
Samples: 285

Max nTPM: 74.0
Min nTPM: 5.1
Std nTPM: 12.0
Median nTPM: 37.9
GTEX-1KD4Q-0011-R6a-SM-F2TAK 40-49 years, male 74.0
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 70.0
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 63.3
GTEX-1EX96-0011-R6a-SM-9OSVV 50-59 years, male 62.8
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 61.8
GTEX-1F6I4-0011-R6a-SM-CE6R4 60-69 years, male 61.2
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 58.7
GTEX-1F6IF-0011-R6a-SM-9QEIO 60-69 years, male 58.2
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 56.6
GTEX-14DAQ-0011-R6a-SM-G9ERO 60-69 years, female 56.4
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 56.2
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 27.7
Samples: 254

Max nTPM: 90.0
Min nTPM: 3.9
Std nTPM: 13.5
Median nTPM: 28.3
GTEX-X4EP-0011-R7B-SM-4PQZW 60-69 years, female 90.0
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 67.1
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 61.0
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 55.6
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 55.0
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 51.8
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 51.5
GTEX-1JMQJ-0011-R7b-SM-F2TA7 50-59 years, male 51.5
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 50.9
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 50.8
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 49.9
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 137.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 104.8
FF:10164-103B2 76 years, female 104.8
Nucleus accumbens
Scaled Tags Per Million: 44.4
FF:10037-101F1 23-56 years, mixed 44.4
Putamen
Scaled Tags Per Million: 137.5
FF:10176-103C5 60 years, female 137.5
Globus pallidus
Scaled Tags Per Million: 41.5
FF:10175-103C4 60 years, female 59.6
FF:10161-103A8 76 years, female 23.5

BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 50.9
Pig sample Sample description nTPM
Caudate
nTPM: 51.0
Samples: 4

Max nTPM: 59.8
Min nTPM: 42.7
Sample A Female 44.3
Sample B Female 57.0
Sample C Male 59.8
Sample D Male 42.7
Putamen
nTPM: 50.2
Samples: 4

Max nTPM: 60.6
Min nTPM: 25.1
Sample A Female 25.1
Sample B Female 56.4
Sample C Male 60.6
Sample D Male 58.7
Septum
nTPM: 32.7
Samples: 4

Max nTPM: 47.6
Min nTPM: 18.0
Sample A Female 47.6
Sample B Female 40.1
Sample C Male 25.2
Sample D Male 18.0
Ventral pallidum
nTPM: 36.4
Samples: 4

Max nTPM: 53.9
Min nTPM: 21.9
Sample A Female 53.9
Sample B Female 34.1
Sample C Male 21.9
Sample D Male 35.5

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 25.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 25.6
Samples: 4

Max nTPM: 30.0
Min nTPM: 21.5
Sample A Male 30.0
Sample B Male 27.9
Sample C Female 22.9
Sample D Female 21.5
Septum
nTPM: 14.3
Samples: 4

Max nTPM: 17.2
Min nTPM: 11.8
Sample A Male 14.4
Sample B Male 13.8
Sample C Female 11.8
Sample D Female 17.2
Ventral forebrain
nTPM: 17.1
Samples: 4

Max nTPM: 19.4
Min nTPM: 14.4
Sample A Male 14.4
Sample B Male 19.1
Sample C Female 19.4
Sample D Female 15.3

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 12.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 12.0
81654113 Antisense, RP_081002_01_C09, Mouse strain C57BL/6J (56 days, male) 12.0
Pallidum
Expression energy: 10.2
81654113 Antisense, RP_081002_01_C09, Mouse strain C57BL/6J (56 days, male) 10.2

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo