MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1860.0 nTPM
HPA Brain:514.5 nTPM
GTEx:1860.0 nTPM
FANTOM5:1148.6 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 514.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 443.6
2666 Male, age 74, left hemisphere 559.6
1870 Female, age 42, unknown 502.2
1833 Male, age 53, unknown 494.9
1827 Male, age 72, unknown 446.7
2219 Male, age 76, both hemispheres 442.8
1830 Male, age 51, unknown 436.4
2411 Female, age 72, unknown 426.3
2828 Female, age 72, unknown 423.0
2586 Male, age 75, left hemisphere 365.5
2019 Male, age 18, unknown 338.4
Dorsal raphe nucleus
nTPM: 427.2
2750 Male, age 76, both hemispheres 460.7
2016 Female, age 72, unknown 454.9
1828 Male, age 53, unknown 450.7
2298 Female, age 72, unknown 397.0
2047 Male, age 72, unknown 372.6
Inferior colliculus
nTPM: 446.1
2849 Male, age 72, unknown 524.1
1890 Male, age 53, unknown 451.8
1848 Female, age 42, unknown 428.3
2097 Female, age 72, unknown 380.3
Median raphe nucleus
nTPM: 496.8
2220 Male, age 76, midline 496.8
Periaquaductal grey, anterior
nTPM: 389.0
2502 Female, age 75, unknown 402.5
1947 Male, age 18, unknown 392.2
1795 Male, age 51, unknown 372.4
Periaquaductal grey, dorsal
nTPM: 470.1
2850 Male, age 76, both hemispheres 568.6
1831 Male, age 72, unknown 491.7
1840 Male, age 53, unknown 439.5
2464 Female, age 72, unknown 380.4
Periaquaductal grey, lateral
nTPM: 424.5
2053 Male, age 18, unknown 461.1
2140 Male, age 76, both hemispheres 451.1
2272 Male, age 74, both hemispheres 361.4
Pretectal area
nTPM: 419.8
1817 Female, age 42, unknown 476.5
2825 Male, age 18, unknown 475.0
1815 Male, age 53, unknown 466.5
2224 Female, age 72, unknown 436.4
1944 Female, age 72, unknown 419.0
2667 Female, age 75, unknown 417.9
2316 Male, age 76, right hemisphere 404.0
1816 Male, age 51, unknown 400.8
2007 Male, age 72, unknown 393.4
2407 Male, age 75, both hemispheres 379.7
2273 Male, age 74, both hemispheres 348.6
Red nucleus
nTPM: 481.1
2503 Female, age 72, unknown 622.6
2725 Female, age 75, unknown 564.8
1821 Female, age 72, unknown 547.2
1865 Male, age 51, unknown 545.4
1954 Female, age 42, unknown 463.1
1904 Male, age 53, unknown 453.7
2823 Male, age 76, right hemisphere 444.3
2584 Male, age 75, left hemisphere 443.4
2769 Male, age 72, unknown 433.5
2227 Male, age 72, unknown 426.7
2588 Male, age 74, left hemisphere 415.1
2785 Male, age 18, unknown 414.0
Substantia nigra
nTPM: 514.5
2699 Male, age 18, unknown 747.8
2665 Male, age 74, both hemispheres 566.7
2241 Male, age 72, unknown 563.3
1851 Male, age 51, unknown 541.5
2409 Female, age 72, unknown 539.4
1916 Female, age 42, unknown 525.0
1889 Female, age 72, unknown 480.6
1941 Male, age 53, unknown 437.0
2590 Female, age 75, unknown 397.2
2583 Male, age 75, right hemisphere 346.4
Superior colliculus
nTPM: 440.4
2587 Male, age 74, left hemisphere 572.8
1913 Female, age 42, unknown 532.6
1995 Male, age 72, unknown 457.2
2668 Female, age 75, unknown 450.8
1839 Male, age 51, unknown 436.7
1895 Male, age 76, right hemisphere 432.2
1796 Male, age 53, unknown 431.7
2087 Female, age 72, unknown 384.6
2664 Male, age 75, both hemispheres 355.3
2261 Male, age 18, unknown 350.3
Ventral tegmental area
nTPM: 495.6
2223 Female, age 72, unknown 575.6
1915 Female, age 42, unknown 547.1
2218 Male, age 76, both hemispheres 511.4
2021 Male, age 53, unknown 469.6
1942 Male, age 51, unknown 438.3
2410 Female, age 72, unknown 431.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 1860.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1860.0
Samples: 183

Max nTPM: 4144.2
Min nTPM: 781.9
Std nTPM: 580.3
Median nTPM: 1735.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 4144.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 4032.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 3571.7
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 3328.7
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 3289.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 3050.9
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 2955.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 2941.9
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 2922.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2908.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 2869.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 1148.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1148.6
FF:10158-103A5 76 years, female 1148.6

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