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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:2947.6 nTPM
GTEx:2947.6 nTPM
FANTOM5:3628.3 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA003364
Squamous epithelial cells Low



VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2947.6
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 2947.6
Samples: 170

Max nTPM: 8138.6
Min nTPM: 1355.8
Std nTPM: 809.8
Median nTPM: 2850.9
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 8138.6
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 6162.1
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 5186.9
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 5054.2
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 4775.8
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 4614.9
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 4586.3
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 4200.1
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 4178.0
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 4011.3
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 3988.0
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 3927.0
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 3847.3
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 3837.9
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 3792.9
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 3773.8
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 3758.9
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 3740.4
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 3737.8
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 3682.9
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 3682.6
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 3679.4
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 3679.2
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 3649.0
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 3634.5
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 3614.0
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 3603.3
GTEX-16NPV-2526-SM-6M483 50-59 years, female 3578.5
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 3539.4
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 3508.7
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 3502.6
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 3494.6
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 3483.4
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 3470.4
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 3465.6
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 3453.5
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 3429.7
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 3417.6
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 3385.5
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 3384.5
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 3310.9
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 3308.7
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 3297.5
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 3280.1
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 3270.8
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 3268.0
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 3263.8
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 3257.3
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 3212.5
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 3205.7
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 3189.5
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 3180.5
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 3154.1
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 3150.4
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 3140.7
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 3138.5
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 3137.1
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 3123.4
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 3120.9
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 3118.6
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 3107.3
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 3106.5
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 3103.9
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 3064.3
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 3062.1
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 3051.1
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 3043.8
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 3043.7
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 3038.9
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 3038.8
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 3005.4
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 3001.7
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 3001.5
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 2992.9
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 2989.4
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 2976.6
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 2960.1
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 2948.2
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 2934.7
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 2915.1
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 2893.6
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 2890.5
GTEX-11I78-2026-SM-5987C 50-59 years, female 2889.5
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 2860.9
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 2856.5
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 2845.2
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 2842.2
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 2827.7
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 2827.6
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 2822.4
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 2816.2
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 2780.9
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 2771.2
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 2759.0
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 2736.7
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 2713.3
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 2695.0
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 2682.1
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 2680.6
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 2673.2
GTEX-14PKU-1326-SM-6871B 40-49 years, female 2665.8
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 2662.5
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 2661.8
GTEX-S341-1226-SM-4AD5S 40-49 years, female 2661.0
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 2652.6
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 2638.9
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 2625.9
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 2586.4
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 2583.8
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 2580.2
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 2568.5
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 2567.7
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 2563.8
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 2562.7
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 2559.0
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 2550.5
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 2550.5
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 2545.3
GTEX-QCQG-1226-SM-48U23 50-59 years, female 2501.7
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 2500.4
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 2496.3
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 2480.6
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 2478.7
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 2471.0
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 2449.7
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 2427.8
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 2423.4
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 2420.7
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 2419.5
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 2411.2
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 2406.5
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 2399.5
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 2392.4
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 2385.4
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 2380.2
GTEX-1C475-0526-SM-793AC 40-49 years, female 2369.7
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 2364.2
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 2352.1
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 2347.2
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 2341.7
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 2320.1
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 2303.4
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 2275.6
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 2268.5
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 2253.2
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 2251.9
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 2249.2
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 2249.2
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 2177.5
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 2177.4
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 2129.2
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 2114.7
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 2108.2
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 2104.7
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 2104.7
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 2071.1
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 2063.3
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 2029.0
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 2015.8
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 1980.6
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 1979.3
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 1973.8
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 1941.4
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 1921.5
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 1873.3
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 1872.3
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 1868.1
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 1526.8
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 1500.2
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 1355.8
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

3628.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 3628.3
FF:10204-103F6 68 years, female 3628.3

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