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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
Tissue methods
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1717.7 nTPM
HPA:1593.2 nTPM
GTEx:1717.7 nTPM
FANTOM5:2296.9 Scaled Tags Per Million
SMALL INTESTINE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA003364
Glandular cells Medium



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1593.2
overview
Male, age 65
Small intestine sample 232
nTPM: 2058.9
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 1513.1
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 1259.4
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 1541.3

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1717.7
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 1717.7
Samples: 207

Max nTPM: 3227.0
Min nTPM: 947.2
Std nTPM: 405.1
Median nTPM: 1666.5
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 3227.0
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 3158.4
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 2968.1
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 2964.6
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 2703.4
GTEX-1RQED-2826-SM-HLJQK 60-69 years, male 2667.3
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 2598.2
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 2592.5
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 2531.1
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 2525.6
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 2465.8
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 2448.6
GTEX-1PFEY-1326-SM-HK791 30-39 years, male 2377.3
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 2358.7
GTEX-1192X-2526-SM-59868 50-59 years, male 2338.4
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 2295.2
GTEX-XPT6-1026-SM-GOQYN 20-29 years, male 2291.2
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 2284.5
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 2255.8
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 2244.9
GTEX-W5X1-1926-SM-GOQYX 40-49 years, female 2230.0
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 2221.3
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 2220.2
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 2209.6
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 2176.4
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 2160.7
GTEX-1M5QR-2226-SM-HLJRV 40-49 years, male 2153.1
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 2151.7
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 2144.3
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 2125.2
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 2118.1
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 2109.5
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 2096.2
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 2096.1
GTEX-117YX-0326-SM-5GICL 50-59 years, male 2063.4
GTEX-ZPU1-1826-SM-GNTB3 40-49 years, male 2062.9
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 2051.4
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 2046.9
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 2031.9
GTEX-YJ8A-2126-SM-GQ1C7 20-29 years, male 2031.2
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 2030.2
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 2006.6
GTEX-13X6H-1826-SM-5O9D1 50-59 years, female 2006.2
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 2002.1
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 1999.2
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1990.6
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 1985.7
GTEX-ZV7C-1426-SM-GNTB8 50-59 years, male 1985.0
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 1978.5
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 1978.2
GTEX-183FY-1626-SM-793D8 20-29 years, male 1977.2
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 1930.9
GTEX-X4LF-1326-SM-HLJSD 50-59 years, male 1920.5
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 1916.8
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 1912.2
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 1908.3
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 1902.0
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 1900.2
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 1896.3
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 1876.0
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 1875.6
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 1875.2
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 1875.1
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 1872.1
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1864.2
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 1849.5
GTEX-1NHNU-2526-SM-HK79M 50-59 years, male 1847.6
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 1835.0
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 1824.1
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 1821.2
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 1815.5
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 1794.8
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1794.3
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 1792.2
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 1782.8
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 1779.8
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 1778.8
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 1775.7
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 1775.4
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 1768.3
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 1767.7
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 1763.8
GTEX-178AV-1226-SM-GOR11 40-49 years, male 1752.2
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 1750.3
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 1748.7
GTEX-13113-1226-SM-5EGHT 60-69 years, female 1748.4
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 1744.8
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 1735.8
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 1726.7
GTEX-WHPG-1826-SM-GNTAH 50-59 years, male 1725.6
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 1722.1
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 1721.7
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 1720.9
GTEX-U8XE-2226-SM-HAUZQ 30-39 years, male 1717.2
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 1715.3
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 1707.3
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 1696.8
GTEX-YB5K-1126-SM-H6Q6O 40-49 years, female 1688.4
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 1680.4
GTEX-ZT9X-1026-SM-HLJS2 40-49 years, male 1679.8
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 1678.5
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 1672.5
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 1668.0
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 1666.5
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 1664.4
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 1653.4
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 1645.4
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 1644.9
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 1641.6
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 1640.9
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 1639.9
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 1636.5
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 1634.6
GTEX-13111-1426-SM-5DUW3 50-59 years, male 1632.2
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 1626.5
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 1621.0
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 1620.9
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 1613.2
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 1612.5
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 1611.4
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 1599.4
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 1594.5
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 1592.8
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 1589.2
GTEX-14PKU-1626-SM-6871C 40-49 years, female 1584.9
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 1581.3
GTEX-1MA7W-0726-SM-HLJQU 20-29 years, female 1579.8
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 1579.7
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 1577.0
GTEX-1HSGN-2126-SM-GA8ZB 40-49 years, female 1575.4
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 1571.1
GTEX-144GM-1026-SM-5O9AZ 20-29 years, male 1560.6
GTEX-1MCYP-1626-SM-HLJQ5 20-29 years, female 1549.0
GTEX-1S831-1526-SM-HLJQS 20-29 years, male 1546.8
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 1542.2
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 1538.5
GTEX-1C475-1426-SM-793CH 40-49 years, female 1531.7
GTEX-1HCUA-1726-SM-GA8Z2 50-59 years, female 1531.1
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 1527.1
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 1510.9
GTEX-1HBPN-1926-SM-GA91H 50-59 years, male 1499.3
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 1498.4
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 1491.0
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 1487.7
GTEX-1HKZK-2226-SM-GA91V 40-49 years, male 1477.7
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 1477.4
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 1468.8
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 1468.1
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 1463.4
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 1458.5
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 1455.7
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 1448.2
GTEX-X3Y1-1526-SM-H6Q6X 40-49 years, male 1446.5
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 1442.0
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 1435.9
GTEX-13O61-1326-SM-5KM31 60-69 years, male 1435.8
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 1428.8
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 1419.4
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 1416.9
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 1415.3
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 1409.7
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 1408.9
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 1402.7
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 1387.9
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 1387.0
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 1378.9
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 1374.0
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 1372.7
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 1367.4
GTEX-14PN3-2026-SM-68729 60-69 years, female 1356.3
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 1339.2
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 1324.4
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 1318.4
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 1316.4
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 1307.8
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 1297.4
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 1293.1
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 1292.5
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 1290.2
GTEX-1122O-1326-SM-5H11F 60-69 years, female 1278.0
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 1272.8
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 1270.3
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 1262.3
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 1253.9
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 1251.9
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 1247.3
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 1239.9
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 1237.0
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 1233.0
GTEX-YFCO-1326-SM-664NV 40-49 years, male 1228.0
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 1220.5
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 1203.6
GTEX-111YS-1426-SM-5GID8 60-69 years, male 1196.2
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 1181.9
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 1181.7
GTEX-14PK6-1626-SM-6871I 70-79 years, female 1163.9
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 1162.8
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 1160.1
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 1148.2
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 1142.4
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 1141.3
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 1111.8
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 1103.7
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 1076.8
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 1003.5
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 976.7
GTEX-ZTSS-0926-SM-59865 40-49 years, male 947.2
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2296.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 2296.9
FF:10024-101D6 15,40,85 years, mixed 2296.9

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