HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: Medium
RNA expressioni
Consensus:63.3 nTPM
HPA Brain:45.6 nTPM
GTEx:63.3 nTPM
FANTOM5:109.4 Scaled Tags Per Million
Pig:33.3 nTPM
Mouse:118.5 nTPM
Allen mouse:7.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA017287Antibody CAB004643
Glial cells HighHigh
Neuronal cells MediumMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 45.6
Sample id Sample description nTPM
Hippocampus
nTPM: 44.0
1898 Male, age 80, left hemisphere 51.1
2621 Female, age 67, right hemisphere 44.7
2529 Female, age 94, left hemisphere 43.1
1855 Male, age 76, left hemisphere 42.9
1911 Female, age 85, right hemisphere 42.3
2148 Female, age 91, left hemisphere 39.8
Dentate gyrus
nTPM: 41.1
2246 Female, age 85, both hemispheres 46.1
1927 Female, age 91, both hemispheres 43.9
2010 Male, age 76, both hemispheres 42.0
2528 Male, age 74, both hemispheres 40.6
2530 Female, age 94, left hemisphere 37.4
2531 Female, age 67, both hemispheres 36.2
Entorhinal gyrus
nTPM: 40.0
1938 Female, age 85, left hemisphere 49.3
2613 Female, age 94, left hemisphere 40.6
1787 Male, age 76, left hemisphere 39.2
2686 Male, age 75, right hemisphere 37.8
2764 Male, age 80, right hemisphere 37.2
2117 Female, age 91, right hemisphere 36.1
Hippocampus, CA1
nTPM: 45.5
2749 Male, age 80, left hemisphere 56.8
2527 Male, age 74, both hemispheres 48.8
1873 Female, age 85, both hemispheres 46.6
2045 Male, age 76, both hemispheres 39.5
2082 Female, age 91, right hemisphere 36.0
Hippocampus, CA2
nTPM: 43.4
1892 Male, age 76, both hemispheres 52.7
2249 Male, age 74, both hemispheres 50.9
1940 Female, age 85, left hemisphere 41.9
1963 Male, age 80, left hemisphere 41.7
2113 Female, age 91, right hemisphere 36.9
2437 Female, age 94, left hemisphere 36.3
Hippocampus, CA3
nTPM: 43.5
2436 Male, age 74, both hemispheres 53.8
2137 Male, age 80, left hemisphere 49.3
1867 Male, age 76, both hemispheres 44.7
1891 Female, age 85, both hemispheres 39.7
2620 Female, age 94, left hemisphere 38.3
2861 Female, age 67, both hemispheres 35.4
Parahippocampal cortex
nTPM: 44.8
2245 Female, age 91, both hemispheres 50.2
1850 Male, age 80, both hemispheres 49.2
1933 Female, age 85, both hemispheres 46.6
2250 Female, age 67, right hemisphere 45.6
2532 Female, age 72, left hemisphere 45.5
2693 Female, age 94, both hemispheres 43.7
1990 Female, age 91, right hemisphere 43.3
2692 Male, age 74, both hemispheres 43.2
2018 Male, age 76, both hemispheres 41.5
2622 Female, age 67, right hemisphere 39.2
Perirhinal gyrus
nTPM: 45.6
1841 Female, age 85, right hemisphere 50.6
1847 Female, age 91, left hemisphere 47.2
2521 Female, age 94, right hemisphere 44.5
2848 Male, age 76, right hemisphere 42.8
1794 Male, age 80, right hemisphere 42.6
Subiculum
nTPM: 39.1
1901 Male, age 80, both hemispheres 45.1
1977 Female, age 85, both hemispheres 39.8
2619 Male, age 74, both hemispheres 39.7
2438 Female, age 94, left hemisphere 38.5
2042 Male, age 76, both hemispheres 37.9
2729 Female, age 91, right hemisphere 33.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 63.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 63.3
Samples: 255

Max nTPM: 104.2
Min nTPM: 42.0
Std nTPM: 10.1
Median nTPM: 61.9
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 104.2
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 92.6
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 92.5
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 91.9
GTEX-11H98-0011-R1a-SM-GIN8O 50-59 years, male 91.5
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 89.6
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 86.7
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 84.8
GTEX-15EO6-0011-R1b-SM-H7OGP 50-59 years, male 83.8
GTEX-1P4AB-0011-R1b-SM-F2TAV 50-59 years, male 83.4
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 83.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 109.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 109.4
FF:10169-103B7 60 years, female 123.5
FF:10153-102I9 76 years, female 95.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 33.3
Pig sample Sample description nTPM
Subiculum
nTPM: 33.3
Samples: 4

Max nTPM: 36.8
Min nTPM: 30.3
Sample A Female 36.8
Sample B Female 30.3
Sample C Male 31.9
Sample D Male 34.3
Dorsal hippocampus
nTPM: 32.9
Samples: 4

Max nTPM: 36.8
Min nTPM: 31.0
Sample A Female 31.7
Sample B Female 31.0
Sample C Male 36.8
Sample D Male 32.0
Entorhinal cortex
nTPM: 31.3
Samples: 4

Max nTPM: 32.4
Min nTPM: 30.2
Sample A Female 31.7
Sample B Female 30.8
Sample C Male 30.2
Sample D Male 32.4
Ventral hippocampus
nTPM: 30.2
Samples: 4

Max nTPM: 32.1
Min nTPM: 25.5
Sample A Female 31.7
Sample B Female 32.1
Sample C Male 25.5
Sample D Male 31.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 118.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 112.8
Samples: 4

Max nTPM: 122.2
Min nTPM: 105.4
Sample A Male 108.1
Sample B Male 122.2
Sample C Female 115.6
Sample D Female 105.4
Hippocampal formation
nTPM: 118.5
Samples: 4

Max nTPM: 136.0
Min nTPM: 104.9
Sample A Male 136.0
Sample B Male 119.9
Sample C Female 104.9
Sample D Female 113.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 7.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 7.4
70429459 Antisense, RP_050614_01_F12, Mouse strain C57BL/6J (56 days, male) 9.4
75081397 Antisense, RP_060315_03_C08, Mouse strain C57BL/6J (56 days, male) 5.4

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