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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Eye
Retina
Tissue methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:71.9 nTPM
GTEx:71.9 nTPM
FANTOM5:21.8 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

71.9
GTEx sample id Sample description nTPM
Retina
Average nTPM: 71.9
Samples: 105

Max nTPM: 109.3
Min nTPM: 40.1
Std nTPM: 14.0
Median nTPM:
413_1 59 years, female 109.3
149_1 88 years, male 107.8
32_1 67 years, male 101.0
490_1 67 years, female 100.8
162_1 79 years, female 100.1
491_1 89 years, female 99.6
501_1 88 years, male 98.6
142_1 61 years, female 97.9
415_1 77 years, female 95.4
139_1 64 years, female 95.3
81_1 67 years, male 93.0
89_1 63 years, male 91.9
43_1 64 years, female 89.5
119_1 70 years, female 89.0
117_1 61 years, male 87.7
35_1 74 years, female 86.5
313_1 79 years, female 85.8
324_1 76 years, male 85.1
466_1 57 years, female 85.1
414_1 84 years, female 84.7
495_1 57 years, female 82.8
315_1 62 years, female 82.6
17_1 71 years, male 81.6
109_1 81 years, female 81.6
42_1 85 years, male 80.6
396_1 62 years, male 80.3
153_1 70 years, female 79.5
347_1 72 years, male 79.0
18_1 88 years, male 78.6
314_1 67 years, male 78.2
126_1 63 years, male 78.1
311_1 78 years, male 78.0
9_1 66 years, female 77.2
120_1 70 years, female 76.9
322_1 76 years, male 76.1
145_1 84 years, male 75.8
348_1 84 years, male 75.6
217_1 76 years, male 75.5
317_1 60 years, male 75.5
99_1 64 years, male 75.2
375_1 74 years, female 75.1
115_1 83 years, male 74.7
137_1 83 years, male 73.7
173_1 67 years, male 73.6
316_1 62 years, male 73.4
499_1 55 years, female 73.4
447_1 81 years, male 73.3
229_1 69 years, female 72.8
172_1 72 years, female 72.7
265_1 87 years, male 72.1
468_1 89 years, male 70.9
526_1 61 years, male 70.7
177_1 74 years, male 69.6
266_1 85 years, male 69.5
6_1 73 years, female 69.3
286_1 68 years, female 68.7
254_1 77 years, female 68.0
41_1 94 years, female 67.7
404_1 82 years, female 67.7
4_1 88 years, female 67.6
518_1 75 years, female 67.4
237_1 82 years, male 66.8
307_1 66 years, female 66.6
288_1 66 years, female 66.2
379_1 60 years, male 65.9
321_1 62 years, female 65.5
308_1 70 years, female 64.6
2_1 77 years, female 64.3
503_1 68 years, male 64.2
246_1 77 years, male 63.9
243_1 75 years, male 63.6
386_1 76 years, male 63.0
350_1 84 years, female 62.6
480_1 63 years, male 62.0
506_1 65 years, male 62.0
189_1 76 years, male 61.9
335_1 73 years, female 61.7
405_1 91 years, male 61.5
291_1 76 years, male 61.4
384_1 83 years, male 61.2
425_1 59 years, female 61.0
406_1 79 years, male 60.1
292_1 71 years, male 59.8
264_1 73 years, female 59.7
295_1 61 years, female 59.4
320_1 89 years, female 59.4
352_1 62 years, male 59.1
163_1 78 years, male 58.7
355_1 70 years, female 58.6
353_1 82 years, female 58.3
318_1 68 years, male 58.2
349_1 83 years, male 58.1
389_1 86 years, female 57.9
517_1 88 years, male 57.8
377_1 82 years, female 56.8
376_1 75 years, female 55.8
251_1 78 years, male 54.6
452_1 88 years, female 54.6
351_1 91 years, male 54.3
354_1 81 years, female 52.1
319_1 81 years, male 52.0
293_1 68 years, female 51.1
356_1 87 years, female 49.1
394_1 75 years, female 46.3
218_1 71 years, female 40.1
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

21.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 21.8
FF:10030-101E3 24-65 years, mixed 21.8

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