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  • ZCRB1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:179.3 nTPM
HPA Brain:79.7 nTPM
GTEx:179.3 nTPM
FANTOM5:119.4 Scaled Tags Per Million
Pig:15.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

79.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 72.2
1981 Female, age 72, midline 89.4
2048 Male, age 55, midline 84.5
2816 Male, age 47, midline 66.0
2565 Male, age 75, midline 65.7
2194 Female, age 79, both hemispheres 55.2
Cervical spinal cord, dorsal horn
nTPM: 64.6
2173 Female, age 72, unknown 91.9
2296 Male, age 66, both hemispheres 80.0
2069 Male, age 47, both hemispheres 65.4
1877 Male, age 55, unknown 61.0
2721 Male, age 90, both hemispheres 45.2
2297 Male, age 75, both hemispheres 43.8
Cervical spinal cord, ventral horn
nTPM: 79.7
2809 Male, age 90, both hemispheres 94.0
2098 Female, age 72, unknown 92.4
2295 Male, age 66, both hemispheres 90.9
2480 Male, age 75, both hemispheres 89.3
2068 Male, age 55, unknown 60.0
2820 Female, age 79, both hemispheres 51.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

179.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 179.3
Samples: 204

Max nTPM: 478.2
Min nTPM: 65.1
Std nTPM: 65.2
Median nTPM: 168.5
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 478.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 425.5
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 406.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 403.7
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 336.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 333.0
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 317.8
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 314.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 307.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 306.1
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 289.1
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 270.9
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 270.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 270.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 270.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 268.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 265.1
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 264.0
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 263.9
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 262.3
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 262.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 262.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 262.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 257.7
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 256.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 254.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 252.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 251.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 250.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 250.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 248.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 248.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 247.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 246.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 242.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 238.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 231.9
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 230.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 229.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 228.3
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 226.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 221.7
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 221.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 218.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 218.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 214.3
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 214.2
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 211.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 207.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 206.3
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 206.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 205.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 204.4
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 202.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 202.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 200.6
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 200.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 200.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 200.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 200.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 199.6
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 198.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 195.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 195.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 193.7
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 191.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 191.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 191.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 190.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 189.5
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 188.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 188.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 188.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 188.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 187.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 186.3
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 185.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 185.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 185.1
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 183.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 183.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 183.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 182.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 182.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 182.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 180.7
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 179.6
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 179.3
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 177.8
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 177.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 176.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 176.3
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 176.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 175.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 174.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 174.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 173.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 173.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 173.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 168.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 168.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 168.7
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 168.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 167.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 167.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 167.2
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 166.8
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 166.6
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 164.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 164.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 164.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 163.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 162.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 161.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 160.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 160.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 160.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 160.1
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 159.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 159.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 159.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 158.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 158.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 157.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 156.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 156.4
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 155.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 151.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 151.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 151.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 151.0
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 150.1
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 149.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 148.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 148.2
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 146.2
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 144.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 144.9
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 144.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 143.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 142.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 142.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 141.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 141.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 141.2
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 140.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 139.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 135.7
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 134.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 134.6
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 134.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 133.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 133.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 132.3
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 132.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 132.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 131.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 131.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 130.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 128.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 128.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 128.7
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 128.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 126.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 126.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 124.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 123.6
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 122.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 122.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 121.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 121.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 120.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 120.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 120.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 118.0
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 117.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 117.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 117.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 116.9
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 116.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 115.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 113.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 113.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 109.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 108.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 106.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 105.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 104.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 103.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 103.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 101.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 99.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 97.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 93.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 92.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 92.6
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 88.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 86.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 83.4
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 83.1
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 81.6
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 77.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 70.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 65.1
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

119.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 119.4
FF:10181-103D1 60 years, female 121.0
FF:10159-103A6 76 years, female 117.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

15.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 15.9
Samples: 4

Max nTPM: 17.5
Min nTPM: 13.8
Sample A Female 16.9
Sample B Female 17.5
Sample C Male 13.8
Sample D Male 15.5
Ventral spinal cord
nTPM: 15.5
Samples: 4

Max nTPM: 17.9
Min nTPM: 13.9
Sample A Female 15.3
Sample B Female 14.9
Sample C Male 13.9
Sample D Male 17.9

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