MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.9 nTPM
HPA Brain:57.7 nTPM
GTEx:11.9 nTPM
FANTOM5:28.6 Scaled Tags Per Million
Pig:16.4 nTPM
Mouse:11.1 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 57.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 53.1
2666 Male, age 74, left hemisphere 83.1
2019 Male, age 18, unknown 58.1
2586 Male, age 75, left hemisphere 57.4
2828 Female, age 72, unknown 55.6
2411 Female, age 72, unknown 55.0
1827 Male, age 72, unknown 48.5
1830 Male, age 51, unknown 46.0
1870 Female, age 42, unknown 43.8
2219 Male, age 76, both hemispheres 42.1
1833 Male, age 53, unknown 41.6
Dorsal raphe nucleus
nTPM: 57.7
2047 Male, age 72, unknown 68.3
1828 Male, age 53, unknown 67.6
2750 Male, age 76, both hemispheres 59.2
2298 Female, age 72, unknown 51.0
2016 Female, age 72, unknown 42.3
Inferior colliculus
nTPM: 47.4
2097 Female, age 72, unknown 56.2
1890 Male, age 53, unknown 54.0
1848 Female, age 42, unknown 42.3
2849 Male, age 72, unknown 36.9
Median raphe nucleus
nTPM: 54.6
2220 Male, age 76, midline 54.6
Periaquaductal grey, anterior
nTPM: 57.7
1947 Male, age 18, unknown 71.6
1795 Male, age 51, unknown 52.0
2502 Female, age 75, unknown 49.6
Periaquaductal grey, dorsal
nTPM: 36.8
2464 Female, age 72, unknown 41.0
1831 Male, age 72, unknown 38.6
2850 Male, age 76, both hemispheres 34.2
1840 Male, age 53, unknown 33.6
Periaquaductal grey, lateral
nTPM: 35.2
2053 Male, age 18, unknown 38.8
2140 Male, age 76, both hemispheres 38.0
2272 Male, age 74, both hemispheres 29.0
Pretectal area
nTPM: 44.7
2007 Male, age 72, unknown 64.8
1817 Female, age 42, unknown 59.0
1816 Male, age 51, unknown 48.1
1944 Female, age 72, unknown 45.5
1815 Male, age 53, unknown 43.9
2667 Female, age 75, unknown 42.3
2825 Male, age 18, unknown 41.9
2316 Male, age 76, right hemisphere 41.4
2224 Female, age 72, unknown 40.7
2407 Male, age 75, both hemispheres 33.9
2273 Male, age 74, both hemispheres 30.3
Red nucleus
nTPM: 54.4
2588 Male, age 74, left hemisphere 69.8
1821 Female, age 72, unknown 61.4
1954 Female, age 42, unknown 60.2
2823 Male, age 76, right hemisphere 54.2
2584 Male, age 75, left hemisphere 54.1
2785 Male, age 18, unknown 52.5
1865 Male, age 51, unknown 52.1
2227 Male, age 72, unknown 51.3
2769 Male, age 72, unknown 51.0
2725 Female, age 75, unknown 49.7
1904 Male, age 53, unknown 48.8
2503 Female, age 72, unknown 47.3
Substantia nigra
nTPM: 56.2
1916 Female, age 42, unknown 81.0
2665 Male, age 74, both hemispheres 73.0
1941 Male, age 53, unknown 70.7
1851 Male, age 51, unknown 59.7
2241 Male, age 72, unknown 56.6
1889 Female, age 72, unknown 52.5
2583 Male, age 75, right hemisphere 52.4
2590 Female, age 75, unknown 43.4
2699 Male, age 18, unknown 37.2
2409 Female, age 72, unknown 35.8
Superior colliculus
nTPM: 44.4
2668 Female, age 75, unknown 70.3
2087 Female, age 72, unknown 49.7
2587 Male, age 74, left hemisphere 46.2
1839 Male, age 51, unknown 44.3
2261 Male, age 18, unknown 43.8
1895 Male, age 76, right hemisphere 41.9
1796 Male, age 53, unknown 39.8
2664 Male, age 75, both hemispheres 39.5
1913 Female, age 42, unknown 34.6
1995 Male, age 72, unknown 33.6
Ventral tegmental area
nTPM: 52.5
2223 Female, age 72, unknown 57.2
1942 Male, age 51, unknown 54.8
2218 Male, age 76, both hemispheres 53.8
1915 Female, age 42, unknown 51.0
2410 Female, age 72, unknown 50.1
2021 Male, age 53, unknown 48.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 11.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.9
Samples: 139

Max nTPM: 33.8
Min nTPM: 3.2
Std nTPM: 4.4
Median nTPM: 10.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 33.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 27.7
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 24.6
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 23.3
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 23.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 20.7
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 20.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 20.1
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 19.5
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 19.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 19.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 28.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 28.6
FF:10158-103A5 76 years, female 28.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 16.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 16.4
Samples: 4

Max nTPM: 20.7
Min nTPM: 12.3
Sample A Female 20.7
Sample B Female 13.5
Sample C Male 19.0
Sample D Male 12.3
Midbrain
nTPM: 13.4
Samples: 4

Max nTPM: 14.7
Min nTPM: 11.9
Sample A Female 12.5
Sample B Female 11.9
Sample C Male 14.4
Sample D Male 14.7
Periaqueductal gray
nTPM: 10.9
Samples: 3

Max nTPM: 13.4
Min nTPM: 8.9
Sample B Female 10.5
Sample C Male 13.4
Sample D Male 8.9
Superior colliculi
nTPM: 15.5
Samples: 4

Max nTPM: 17.1
Min nTPM: 13.4
Sample A Female 16.4
Sample B Female 13.4
Sample C Male 15.0
Sample D Male 17.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 11.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 11.1
Samples: 4

Max nTPM: 12.0
Min nTPM: 9.6
Sample A Male 9.6
Sample B Male 12.0
Sample C Female 11.3
Sample D Female 11.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
69874036 Antisense, RP_050512_02_E07, Mouse strain C57BL/6J (56 days, male) 0.7

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