MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.3 nTPM
HPA Brain:21.4 nTPM
GTEx:11.3 nTPM
FANTOM5:5.4 Scaled Tags Per Million
Pig:8.8 nTPM
Mouse:8.6 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 21.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.9
2666 Male, age 74, left hemisphere 22.9
2019 Male, age 18, unknown 19.5
2828 Female, age 72, unknown 18.7
2586 Male, age 75, left hemisphere 16.9
2411 Female, age 72, unknown 16.1
1870 Female, age 42, unknown 15.7
1833 Male, age 53, unknown 15.0
1830 Male, age 51, unknown 14.8
1827 Male, age 72, unknown 11.3
2219 Male, age 76, both hemispheres 8.3
Dorsal raphe nucleus
nTPM: 15.2
2750 Male, age 76, both hemispheres 19.8
1828 Male, age 53, unknown 17.1
2047 Male, age 72, unknown 16.1
2016 Female, age 72, unknown 12.3
2298 Female, age 72, unknown 10.8
Inferior colliculus
nTPM: 14.8
1890 Male, age 53, unknown 18.8
2097 Female, age 72, unknown 15.4
1848 Female, age 42, unknown 14.1
2849 Male, age 72, unknown 11.0
Median raphe nucleus
nTPM: 11.6
2220 Male, age 76, midline 11.6
Periaquaductal grey, anterior
nTPM: 14.8
2502 Female, age 75, unknown 17.0
1947 Male, age 18, unknown 16.2
1795 Male, age 51, unknown 11.3
Periaquaductal grey, dorsal
nTPM: 10.8
1831 Male, age 72, unknown 13.4
2464 Female, age 72, unknown 12.4
1840 Male, age 53, unknown 8.8
2850 Male, age 76, both hemispheres 8.6
Periaquaductal grey, lateral
nTPM: 10.9
2053 Male, age 18, unknown 12.7
2272 Male, age 74, both hemispheres 11.1
2140 Male, age 76, both hemispheres 8.9
Pretectal area
nTPM: 12.5
1817 Female, age 42, unknown 19.4
2007 Male, age 72, unknown 19.1
2316 Male, age 76, right hemisphere 15.3
1944 Female, age 72, unknown 14.8
1816 Male, age 51, unknown 12.8
1815 Male, age 53, unknown 12.6
2667 Female, age 75, unknown 11.4
2825 Male, age 18, unknown 10.8
2224 Female, age 72, unknown 9.4
2273 Male, age 74, both hemispheres 5.9
2407 Male, age 75, both hemispheres 5.8
Red nucleus
nTPM: 21.4
2588 Male, age 74, left hemisphere 29.4
1954 Female, age 42, unknown 23.7
2769 Male, age 72, unknown 23.3
1821 Female, age 72, unknown 23.1
1865 Male, age 51, unknown 23.0
2227 Male, age 72, unknown 22.5
2823 Male, age 76, right hemisphere 21.9
1904 Male, age 53, unknown 21.4
2503 Female, age 72, unknown 18.5
2584 Male, age 75, left hemisphere 18.3
2725 Female, age 75, unknown 16.2
2785 Male, age 18, unknown 16.0
Substantia nigra
nTPM: 14.0
2665 Male, age 74, both hemispheres 26.9
1889 Female, age 72, unknown 16.3
1851 Male, age 51, unknown 15.3
2583 Male, age 75, right hemisphere 12.7
1916 Female, age 42, unknown 12.3
1941 Male, age 53, unknown 12.3
2241 Male, age 72, unknown 11.8
2590 Female, age 75, unknown 11.6
2409 Female, age 72, unknown 10.6
2699 Male, age 18, unknown 10.5
Superior colliculus
nTPM: 12.6
2668 Female, age 75, unknown 16.6
1895 Male, age 76, right hemisphere 14.3
2587 Male, age 74, left hemisphere 14.1
2261 Male, age 18, unknown 13.8
1913 Female, age 42, unknown 13.5
2087 Female, age 72, unknown 13.1
1839 Male, age 51, unknown 12.2
1796 Male, age 53, unknown 10.3
1995 Male, age 72, unknown 9.7
2664 Male, age 75, both hemispheres 8.7
Ventral tegmental area
nTPM: 14.3
2410 Female, age 72, unknown 14.9
1942 Male, age 51, unknown 14.7
2223 Female, age 72, unknown 14.7
2218 Male, age 76, both hemispheres 14.4
2021 Male, age 53, unknown 14.3
1915 Female, age 42, unknown 12.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 11.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.3
Samples: 139

Max nTPM: 55.2
Min nTPM: 2.2
Std nTPM: 7.4
Median nTPM: 8.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 55.2
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 31.2
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 29.1
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 28.7
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 28.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 28.4
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 27.4
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 27.3
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 27.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 26.2
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 23.8
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 5.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 5.4
FF:10158-103A5 76 years, female 5.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 8.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 8.8
Samples: 4

Max nTPM: 11.2
Min nTPM: 6.9
Sample A Female 6.9
Sample B Female 11.2
Sample C Male 8.3
Sample D Male 8.9
Midbrain
nTPM: 7.1
Samples: 4

Max nTPM: 8.6
Min nTPM: 5.8
Sample A Female 7.1
Sample B Female 5.8
Sample C Male 8.6
Sample D Male 6.8
Periaqueductal gray
nTPM: 4.6
Samples: 3

Max nTPM: 5.5
Min nTPM: 4.0
Sample B Female 4.0
Sample C Male 5.5
Sample D Male 4.4
Superior colliculi
nTPM: 8.3
Samples: 4

Max nTPM: 10.6
Min nTPM: 5.9
Sample A Female 8.9
Sample B Female 5.9
Sample C Male 7.6
Sample D Male 10.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 8.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 8.7
Samples: 4

Max nTPM: 9.4
Min nTPM: 7.7
Sample A Male 8.3
Sample B Male 7.7
Sample C Female 9.4
Sample D Female 9.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
77454605 Antisense, RP_070129_01_A09, Mouse strain C57BL/6J (56 days, male) 0.8
79488929 Antisense, RP_070129_01_A09, Mouse strain C57BL/6J (56 days, male) 0.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org