BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Low
RNA expressioni
Consensus:8.1 nTPM
HPA Brain:15.5 nTPM
GTEx:8.1 nTPM
FANTOM5:27.2 Scaled Tags Per Million
Pig:5.1 nTPM
Mouse:3.1 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

CAUDATE - Antibody stainingi
Antibody HPA054084
Glial cells Medium
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 15.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 13.9
2289 Male, age 61, right hemisphere 18.4
1781 Male, age 74, unknown 16.1
1857 Female, age 85, left hemisphere 14.9
1854 Male, age 80, left hemisphere 14.4
2290 Female, age 72, unknown 12.6
2288 Male, age 75, left hemisphere 12.4
2846 Female, age 79, unknown 11.7
2481 Female, age 94, left hemisphere 10.7
Globus pallidus, externus
nTPM: 11.7
2567 Female, age 72, unknown 13.9
2646 Male, age 61, right hemisphere 13.5
2395 Male, age 75, both hemispheres 11.1
2772 Female, age 79, unknown 10.2
1996 Male, age 80, right hemisphere 10.1
Globus pallidus, internus
nTPM: 10.3
2566 Female, age 72, unknown 12.8
1818 Male, age 74, unknown 11.2
2111 Female, age 85, right hemisphere 10.3
2037 Male, age 80, right hemisphere 9.8
2778 Female, age 91, both hemispheres 9.5
2483 Female, age 94, right hemisphere 9.4
2287 Male, age 75, right hemisphere 9.1
Nucleus accumbens
nTPM: 13.6
1783 Male, age 74, unknown 17.6
2824 Male, age 61, right hemisphere 17.3
1856 Female, age 91, right hemisphere 14.1
2732 Male, age 80, right hemisphere 13.5
2698 Female, age 72, unknown 12.3
2286 Male, age 75, left hemisphere 11.7
1806 Female, age 85, left hemisphere 11.4
2391 Female, age 94, left hemisphere 11.1
Nucleus basalis of Meynert
nTPM: 12.9
2569 Male, age 61, both hemispheres 15.0
2484 Female, age 94, left hemisphere 14.2
2393 Male, age 80, right hemisphere 12.6
2821 Male, age 75, both hemispheres 9.7
Nucleus of the diagonal band
nTPM: 15.2
2029 Male, age 61, right hemisphere 18.0
2195 Female, age 85, both hemispheres 16.2
2775 Male, age 80, right hemisphere 14.5
1979 Male, age 74, unknown 13.8
1812 Female, age 91, both hemispheres 13.6
Putamen
nTPM: 13.8
1838 Male, age 80, right hemisphere 16.1
2647 Male, age 75, left hemisphere 15.2
2489 Female, age 72, unknown 14.0
2466 Female, age 79, unknown 13.9
1937 Female, age 91, right hemisphere 13.7
1829 Male, age 74, unknown 12.4
2482 Female, age 94, left hemisphere 11.6
Septal nuclei
nTPM: 14.0
2059 Female, age 85, both hemispheres 17.3
1960 Male, age 74, unknown 16.9
2199 Male, age 80, right hemisphere 14.9
2009 Female, age 91, both hemispheres 14.1
2031 Female, age 72, unknown 11.8
2629 Female, age 94, right hemisphere 11.8
2394 Male, age 61, left hemisphere 10.8
Stria terminalis, bed nucleus
nTPM: 15.5
1974 Female, age 91, both hemispheres 16.9
2486 Female, age 94, both hemispheres 16.0
2201 Male, age 74, unknown 13.5

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 8.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 6.9
Samples: 300

Max nTPM: 14.3
Min nTPM: 1.5
Std nTPM: 2.2
Median nTPM: 6.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 14.3
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 13.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 13.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 13.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 12.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 12.6
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 12.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 12.0
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 12.0
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 11.7
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 11.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 8.1
Samples: 285

Max nTPM: 16.7
Min nTPM: 2.3
Std nTPM: 2.6
Median nTPM: 8.0
GTEX-ZZPT-0011-R6a-SM-GPRX6 50-59 years, male 16.7
GTEX-1LH75-0011-R6a-SM-EXURS 50-59 years, female 16.4
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 15.6
GTEX-XLM4-0011-R6A-SM-4AT4B 60-69 years, male 14.4
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 14.0
GTEX-1B933-0011-R6b-SM-79OOQ 50-59 years, female 13.7
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 13.6
GTEX-13OW6-0011-R6b-SM-5L3GR 50-59 years, male 13.4
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 13.4
GTEX-ZDXO-0011-R6a-SM-4WWCT 60-69 years, male 13.3
GTEX-131XH-0011-R6a-SM-5KM2G 50-59 years, male 13.2
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Brain - Putamen (basal ganglia)
Average nTPM: 6.2
Samples: 254

Max nTPM: 15.8
Min nTPM: 1.5
Std nTPM: 2.0
Median nTPM: 5.9
GTEX-1PPGY-0011-R7b-SM-F33YV 60-69 years, male 15.8
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 12.3
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 11.7
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 11.2
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 10.8
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 10.3
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 10.3
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 10.3
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 10.1
GTEX-1JMQJ-0011-R7b-SM-F2TA7 50-59 years, male 10.1
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 9.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 27.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 27.2
FF:10164-103B2 76 years, female 27.2
Nucleus accumbens
Scaled Tags Per Million: 12.6
FF:10037-101F1 23-56 years, mixed 12.6
Putamen
Scaled Tags Per Million: 14.2
FF:10176-103C5 60 years, female 14.2
Globus pallidus
Scaled Tags Per Million: 11.5
FF:10161-103A8 76 years, female 15.9
FF:10175-103C4 60 years, female 7.0

BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 5.1
Pig sample Sample description nTPM
Caudate
nTPM: 5.1
Samples: 4

Max nTPM: 5.8
Min nTPM: 4.5
Sample A Female 4.5
Sample B Female 5.4
Sample C Male 5.8
Sample D Male 4.7
Putamen
nTPM: 4.3
Samples: 4

Max nTPM: 5.3
Min nTPM: 3.8
Sample A Female 3.8
Sample B Female 4.2
Sample C Male 3.9
Sample D Male 5.3
Septum
nTPM: 4.3
Samples: 4

Max nTPM: 4.7
Min nTPM: 4.1
Sample A Female 4.1
Sample B Female 4.2
Sample C Male 4.7
Sample D Male 4.3
Ventral pallidum
nTPM: 4.7
Samples: 4

Max nTPM: 5.3
Min nTPM: 4.1
Sample A Female 4.1
Sample B Female 5.0
Sample C Male 5.3
Sample D Male 4.4

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 3.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 3.1
Samples: 4

Max nTPM: 3.4
Min nTPM: 2.8
Sample A Male 2.8
Sample B Male 3.0
Sample C Female 3.3
Sample D Female 3.4
Septum
nTPM: 3.0
Samples: 4

Max nTPM: 3.3
Min nTPM: 2.7
Sample A Male 2.7
Sample B Male 3.0
Sample C Female 2.8
Sample D Female 3.3
Ventral forebrain
nTPM: 3.2
Samples: 4

Max nTPM: 3.5
Min nTPM: 2.6
Sample A Male 3.2
Sample B Male 2.6
Sample C Female 3.3
Sample D Female 3.5

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
68861692 Antisense, RP_050224_02_G06, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.1
68861692 Antisense, RP_050224_02_G06, Mouse strain C57BL/6J (56 days, male) 0.1

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