MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:61.8 nTPM
HPA Brain:105.9 nTPM
GTEx:61.8 nTPM
FANTOM5:83.0 Scaled Tags Per Million
Pig:59.8 nTPM
Mouse:19.4 nTPM
Allen mouse:0.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 105.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 90.9
2666 Male, age 74, left hemisphere 211.2
2219 Male, age 76, both hemispheres 116.2
2411 Female, age 72, unknown 94.4
1827 Male, age 72, unknown 86.7
1870 Female, age 42, unknown 78.6
1833 Male, age 53, unknown 73.8
2586 Male, age 75, left hemisphere 71.3
1830 Male, age 51, unknown 66.1
2828 Female, age 72, unknown 63.8
2019 Male, age 18, unknown 46.9
Dorsal raphe nucleus
nTPM: 86.3
2298 Female, age 72, unknown 114.1
2047 Male, age 72, unknown 96.0
1828 Male, age 53, unknown 85.0
2016 Female, age 72, unknown 73.6
2750 Male, age 76, both hemispheres 62.8
Inferior colliculus
nTPM: 75.6
2849 Male, age 72, unknown 81.1
1848 Female, age 42, unknown 77.5
2097 Female, age 72, unknown 76.2
1890 Male, age 53, unknown 67.8
Median raphe nucleus
nTPM: 105.9
2220 Male, age 76, midline 105.9
Periaquaductal grey, anterior
nTPM: 91.7
1947 Male, age 18, unknown 121.9
1795 Male, age 51, unknown 86.7
2502 Female, age 75, unknown 66.5
Periaquaductal grey, dorsal
nTPM: 72.1
1840 Male, age 53, unknown 94.5
2464 Female, age 72, unknown 74.8
2850 Male, age 76, both hemispheres 60.5
1831 Male, age 72, unknown 58.4
Periaquaductal grey, lateral
nTPM: 63.6
2053 Male, age 18, unknown 74.3
2272 Male, age 74, both hemispheres 63.2
2140 Male, age 76, both hemispheres 53.3
Pretectal area
nTPM: 74.0
1816 Male, age 51, unknown 91.4
2224 Female, age 72, unknown 88.5
2825 Male, age 18, unknown 87.8
1944 Female, age 72, unknown 81.0
1815 Male, age 53, unknown 76.6
2407 Male, age 75, both hemispheres 76.3
2007 Male, age 72, unknown 76.2
1817 Female, age 42, unknown 74.7
2667 Female, age 75, unknown 62.4
2273 Male, age 74, both hemispheres 58.3
2316 Male, age 76, right hemisphere 40.5
Red nucleus
nTPM: 57.2
2584 Male, age 75, left hemisphere 78.8
1821 Female, age 72, unknown 73.5
2725 Female, age 75, unknown 65.8
1954 Female, age 42, unknown 62.0
2503 Female, age 72, unknown 58.1
2227 Male, age 72, unknown 58.0
2769 Male, age 72, unknown 57.7
2588 Male, age 74, left hemisphere 53.8
2785 Male, age 18, unknown 47.4
1865 Male, age 51, unknown 47.3
1904 Male, age 53, unknown 47.0
2823 Male, age 76, right hemisphere 37.0
Substantia nigra
nTPM: 93.5
2241 Male, age 72, unknown 126.8
1916 Female, age 42, unknown 119.7
1851 Male, age 51, unknown 102.7
2583 Male, age 75, right hemisphere 94.8
1889 Female, age 72, unknown 93.8
1941 Male, age 53, unknown 92.1
2409 Female, age 72, unknown 88.8
2699 Male, age 18, unknown 87.2
2665 Male, age 74, both hemispheres 71.2
2590 Female, age 75, unknown 57.6
Superior colliculus
nTPM: 74.4
2668 Female, age 75, unknown 147.4
1796 Male, age 53, unknown 88.8
2261 Male, age 18, unknown 79.1
1839 Male, age 51, unknown 78.6
2087 Female, age 72, unknown 71.6
2664 Male, age 75, both hemispheres 63.2
2587 Male, age 74, left hemisphere 60.0
1913 Female, age 42, unknown 56.3
1895 Male, age 76, right hemisphere 56.1
1995 Male, age 72, unknown 43.1
Ventral tegmental area
nTPM: 83.0
2410 Female, age 72, unknown 105.9
1915 Female, age 42, unknown 94.4
1942 Male, age 51, unknown 79.5
2218 Male, age 76, both hemispheres 75.6
2223 Female, age 72, unknown 74.5
2021 Male, age 53, unknown 68.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 61.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 61.8
Samples: 183

Max nTPM: 381.2
Min nTPM: 17.2
Std nTPM: 49.4
Median nTPM: 49.1
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 381.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 328.8
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 246.3
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 240.3
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 234.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 185.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 164.6
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 152.9
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 148.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 137.5
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 137.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 83.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 83.0
FF:10158-103A5 76 years, female 83.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 59.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 54.5
Samples: 4

Max nTPM: 79.2
Min nTPM: 25.8
Sample A Female 71.7
Sample B Female 41.4
Sample C Male 79.2
Sample D Male 25.8
Midbrain
nTPM: 56.5
Samples: 4

Max nTPM: 83.3
Min nTPM: 29.6
Sample A Female 29.6
Sample B Female 50.2
Sample C Male 83.3
Sample D Male 62.7
Periaqueductal gray
nTPM: 59.8
Samples: 3

Max nTPM: 70.7
Min nTPM: 53.5
Sample B Female 55.1
Sample C Male 70.7
Sample D Male 53.5
Superior colliculi
nTPM: 57.1
Samples: 4

Max nTPM: 67.4
Min nTPM: 41.6
Sample A Female 62.5
Sample B Female 41.6
Sample C Male 67.4
Sample D Male 57.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 19.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 19.4
Samples: 4

Max nTPM: 19.9
Min nTPM: 18.5
Sample A Male 18.5
Sample B Male 19.9
Sample C Female 19.7
Sample D Female 19.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
70744391 Antisense, RP_050725_02_B06, Mouse strain C57BL/6J (56 days, male) 0.8
67814214 Antisense, RP_040920_01_G02, Mouse strain C57BL/6J (56 days, male) 0.3

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