We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
SEC11A
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • SEC11A
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:93.4 nTPM
HPA Brain:51.1 nTPM
GTEx:93.4 nTPM
FANTOM5:93.3 Scaled Tags Per Million
Pig:24.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

51.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 43.9
1981 Female, age 72, midline 51.4
2048 Male, age 55, midline 51.4
2816 Male, age 47, midline 44.3
2194 Female, age 79, both hemispheres 39.6
2565 Male, age 75, midline 32.8
Cervical spinal cord, dorsal horn
nTPM: 43.9
2173 Female, age 72, unknown 56.2
2069 Male, age 47, both hemispheres 48.8
1877 Male, age 55, unknown 47.0
2296 Male, age 66, both hemispheres 46.4
2721 Male, age 90, both hemispheres 33.7
2297 Male, age 75, both hemispheres 31.5
Cervical spinal cord, ventral horn
nTPM: 51.1
2098 Female, age 72, unknown 66.1
2809 Male, age 90, both hemispheres 62.3
2480 Male, age 75, both hemispheres 57.0
2295 Male, age 66, both hemispheres 49.9
2068 Male, age 55, unknown 38.4
2820 Female, age 79, both hemispheres 32.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

93.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 93.4
Samples: 204

Max nTPM: 180.4
Min nTPM: 46.8
Std nTPM: 18.6
Median nTPM: 91.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 180.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 156.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 142.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 140.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 140.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 136.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 129.2
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 128.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 126.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 126.0
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 123.9
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 120.7
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 120.4
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 119.9
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 119.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 119.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 118.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 118.6
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 118.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 116.9
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 116.9
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 116.2
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 116.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 115.6
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 115.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 115.3
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 114.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 114.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 113.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 112.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 112.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 112.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 111.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 110.4
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 108.8
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 108.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 107.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 106.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 106.4
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 106.4
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 106.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 106.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 106.0
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 105.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 105.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 105.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 105.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 104.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 104.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 104.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 104.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 103.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 102.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 102.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 102.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 102.6
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 102.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 101.6
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 101.5
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 101.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 101.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 100.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 100.5
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 100.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 100.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 99.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 99.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 99.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 98.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 98.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 98.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 98.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 98.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 98.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 98.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 98.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 98.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 97.7
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 97.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 97.1
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 96.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 96.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 96.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 95.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 95.8
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 95.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 95.4
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 95.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 94.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 94.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 94.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 93.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 93.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 93.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 93.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 93.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 93.3
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 93.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 92.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 92.4
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 92.2
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 91.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 91.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 91.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 91.1
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 91.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 90.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 90.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 90.8
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 90.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 90.2
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 90.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 90.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 89.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 89.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 88.9
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 88.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 88.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 88.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 88.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 88.0
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 87.9
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 87.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 87.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 87.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 87.3
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 86.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 86.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 86.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 86.7
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 86.1
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 85.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 84.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 84.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 84.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 84.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 84.3
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 84.3
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 84.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 84.0
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 83.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 83.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 82.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 82.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 82.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 82.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 81.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 81.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 81.3
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 81.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 80.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 80.3
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 80.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 79.8
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 79.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 79.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 79.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 79.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 79.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 78.7
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 78.6
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 78.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 78.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 77.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 77.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 77.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 76.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 76.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 76.1
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 75.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 75.9
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 75.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 74.9
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 74.8
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 74.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 74.6
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 74.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 73.8
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 73.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 73.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 73.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 73.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 72.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 72.2
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 72.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 71.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 70.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 69.9
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 69.9
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 69.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 68.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 67.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 67.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 66.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 65.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 65.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 65.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 65.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 64.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 63.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 61.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 59.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 51.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 46.8
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

93.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 93.3
FF:10159-103A6 76 years, female 106.2
FF:10181-103D1 60 years, female 80.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

24.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 24.0
Samples: 4

Max nTPM: 31.0
Min nTPM: 17.3
Sample A Female 20.5
Sample B Female 27.2
Sample C Male 31.0
Sample D Male 17.3
Ventral spinal cord
nTPM: 21.9
Samples: 4

Max nTPM: 24.4
Min nTPM: 20.0
Sample A Female 20.0
Sample B Female 24.4
Sample C Male 21.9
Sample D Male 21.3

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo