MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:29.6 nTPM
HPA Brain:79.8 nTPM
GTEx:29.6 nTPM
FANTOM5:81.3 Scaled Tags Per Million
Pig:51.3 nTPM
Mouse:11.2 nTPM
Allen mouse:1.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 79.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 61.5
1830 Male, age 51, unknown 80.9
2411 Female, age 72, unknown 72.0
2019 Male, age 18, unknown 71.8
1833 Male, age 53, unknown 70.7
1870 Female, age 42, unknown 63.9
2586 Male, age 75, left hemisphere 58.5
2666 Male, age 74, left hemisphere 56.5
2828 Female, age 72, unknown 52.2
2219 Male, age 76, both hemispheres 45.1
1827 Male, age 72, unknown 43.0
Dorsal raphe nucleus
nTPM: 56.7
2750 Male, age 76, both hemispheres 83.3
2016 Female, age 72, unknown 63.8
1828 Male, age 53, unknown 49.8
2298 Female, age 72, unknown 47.0
2047 Male, age 72, unknown 39.8
Inferior colliculus
nTPM: 40.2
1890 Male, age 53, unknown 46.0
2849 Male, age 72, unknown 45.4
1848 Female, age 42, unknown 40.7
2097 Female, age 72, unknown 28.7
Median raphe nucleus
nTPM: 43.7
2220 Male, age 76, midline 43.7
Periaquaductal grey, anterior
nTPM: 43.0
2502 Female, age 75, unknown 46.6
1795 Male, age 51, unknown 45.0
1947 Male, age 18, unknown 37.4
Periaquaductal grey, dorsal
nTPM: 43.9
2464 Female, age 72, unknown 47.4
2850 Male, age 76, both hemispheres 45.0
1831 Male, age 72, unknown 43.8
1840 Male, age 53, unknown 39.4
Periaquaductal grey, lateral
nTPM: 54.1
2272 Male, age 74, both hemispheres 66.2
2053 Male, age 18, unknown 52.4
2140 Male, age 76, both hemispheres 43.6
Pretectal area
nTPM: 49.5
2316 Male, age 76, right hemisphere 68.2
2407 Male, age 75, both hemispheres 65.9
1815 Male, age 53, unknown 59.8
2825 Male, age 18, unknown 58.5
2224 Female, age 72, unknown 54.7
2273 Male, age 74, both hemispheres 53.3
2007 Male, age 72, unknown 46.2
1817 Female, age 42, unknown 43.2
2667 Female, age 75, unknown 40.9
1944 Female, age 72, unknown 28.4
1816 Male, age 51, unknown 25.0
Red nucleus
nTPM: 79.8
2823 Male, age 76, right hemisphere 118.4
1865 Male, age 51, unknown 95.9
1904 Male, age 53, unknown 89.9
2769 Male, age 72, unknown 88.9
2785 Male, age 18, unknown 82.7
2227 Male, age 72, unknown 82.2
2503 Female, age 72, unknown 73.9
2584 Male, age 75, left hemisphere 72.9
1821 Female, age 72, unknown 70.4
2588 Male, age 74, left hemisphere 69.0
1954 Female, age 42, unknown 57.8
2725 Female, age 75, unknown 55.7
Substantia nigra
nTPM: 49.6
2590 Female, age 75, unknown 69.4
2583 Male, age 75, right hemisphere 64.4
2409 Female, age 72, unknown 57.1
2699 Male, age 18, unknown 54.6
1851 Male, age 51, unknown 51.4
2665 Male, age 74, both hemispheres 45.4
1889 Female, age 72, unknown 45.1
2241 Male, age 72, unknown 39.4
1941 Male, age 53, unknown 38.8
1916 Female, age 42, unknown 30.2
Superior colliculus
nTPM: 59.3
1995 Male, age 72, unknown 97.8
1913 Female, age 42, unknown 87.2
1895 Male, age 76, right hemisphere 77.3
2668 Female, age 75, unknown 58.1
2587 Male, age 74, left hemisphere 57.7
1839 Male, age 51, unknown 56.1
2664 Male, age 75, both hemispheres 48.5
1796 Male, age 53, unknown 41.0
2261 Male, age 18, unknown 36.8
2087 Female, age 72, unknown 32.1
Ventral tegmental area
nTPM: 55.9
2223 Female, age 72, unknown 70.9
2410 Female, age 72, unknown 62.4
2021 Male, age 53, unknown 57.4
1942 Male, age 51, unknown 55.7
2218 Male, age 76, both hemispheres 47.1
1915 Female, age 42, unknown 41.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 29.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 29.6
Samples: 183

Max nTPM: 94.5
Min nTPM: 10.5
Std nTPM: 11.8
Median nTPM: 27.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 94.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 78.0
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 63.8
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 60.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 58.4
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 57.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 55.0
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 54.3
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 52.2
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 51.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 50.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 81.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 81.3
FF:10158-103A5 76 years, female 81.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 51.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 51.4
Samples: 4

Max nTPM: 65.7
Min nTPM: 40.2
Sample A Female 49.9
Sample B Female 40.2
Sample C Male 49.6
Sample D Male 65.7
Midbrain
nTPM: 49.7
Samples: 4

Max nTPM: 82.1
Min nTPM: 33.2
Sample A Female 82.1
Sample B Female 43.8
Sample C Male 33.2
Sample D Male 39.8
Periaqueductal gray
nTPM: 37.0
Samples: 3

Max nTPM: 39.3
Min nTPM: 35.6
Sample B Female 36.0
Sample C Male 35.6
Sample D Male 39.3
Superior colliculi
nTPM: 39.0
Samples: 4

Max nTPM: 43.2
Min nTPM: 30.3
Sample A Female 43.2
Sample B Female 30.3
Sample C Male 41.0
Sample D Male 41.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 11.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 11.2
Samples: 4

Max nTPM: 12.8
Min nTPM: 9.5
Sample A Male 12.6
Sample B Male 12.8
Sample C Female 9.5
Sample D Female 9.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
70743844 Antisense, RP_050610_01_A01, Mouse strain C57BL/6J (56 days, male) 1.5
67792189 Antisense, RP_040920_01_C07, Mouse strain C57BL/6J (56 days, male) 0.6

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