HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:25.6 nTPM
HPA Brain:48.2 nTPM
GTEx:25.6 nTPM
FANTOM5:16.4 Scaled Tags Per Million
Pig:25.8 nTPM
Mouse:16.5 nTPM
Allen mouse:4.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA041165Antibody HPA041839
Glial cells Not detectedMedium
Neuronal cells LowLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 48.2
Sample id Sample description nTPM
Hippocampus
nTPM: 39.2
2621 Female, age 67, right hemisphere 48.4
1898 Male, age 80, left hemisphere 41.5
1911 Female, age 85, right hemisphere 37.3
2148 Female, age 91, left hemisphere 37.3
2529 Female, age 94, left hemisphere 37.0
1855 Male, age 76, left hemisphere 34.0
Dentate gyrus
nTPM: 40.4
2531 Female, age 67, both hemispheres 48.2
1927 Female, age 91, both hemispheres 47.7
2530 Female, age 94, left hemisphere 42.4
2528 Male, age 74, both hemispheres 35.3
2246 Female, age 85, both hemispheres 34.6
2010 Male, age 76, both hemispheres 34.4
Entorhinal gyrus
nTPM: 43.9
2613 Female, age 94, left hemisphere 57.8
2764 Male, age 80, right hemisphere 45.8
1787 Male, age 76, left hemisphere 45.7
1938 Female, age 85, left hemisphere 42.2
2686 Male, age 75, right hemisphere 40.7
2117 Female, age 91, right hemisphere 31.5
Hippocampus, CA1
nTPM: 43.8
2749 Male, age 80, left hemisphere 59.8
2082 Female, age 91, right hemisphere 43.3
2527 Male, age 74, both hemispheres 39.2
2045 Male, age 76, both hemispheres 38.9
1873 Female, age 85, both hemispheres 37.6
Hippocampus, CA2
nTPM: 41.4
2437 Female, age 94, left hemisphere 44.2
2113 Female, age 91, right hemisphere 43.4
1892 Male, age 76, both hemispheres 42.8
1963 Male, age 80, left hemisphere 42.8
2249 Male, age 74, both hemispheres 38.2
1940 Female, age 85, left hemisphere 37.2
Hippocampus, CA3
nTPM: 46.2
2137 Male, age 80, left hemisphere 60.7
2861 Female, age 67, both hemispheres 52.5
2620 Female, age 94, left hemisphere 50.8
2436 Male, age 74, both hemispheres 41.2
1867 Male, age 76, both hemispheres 39.4
1891 Female, age 85, both hemispheres 32.7
Parahippocampal cortex
nTPM: 42.7
2622 Female, age 67, right hemisphere 52.3
2245 Female, age 91, both hemispheres 48.6
2693 Female, age 94, both hemispheres 44.2
1850 Male, age 80, both hemispheres 43.4
2532 Female, age 72, left hemisphere 42.6
1933 Female, age 85, both hemispheres 40.8
2250 Female, age 67, right hemisphere 40.7
1990 Female, age 91, right hemisphere 40.0
2018 Male, age 76, both hemispheres 39.7
2692 Male, age 74, both hemispheres 34.6
Perirhinal gyrus
nTPM: 48.2
1794 Male, age 80, right hemisphere 55.9
1847 Female, age 91, left hemisphere 52.9
2521 Female, age 94, right hemisphere 47.1
1841 Female, age 85, right hemisphere 45.2
2848 Male, age 76, right hemisphere 39.9
Subiculum
nTPM: 36.3
1977 Female, age 85, both hemispheres 41.0
2438 Female, age 94, left hemisphere 39.6
1901 Male, age 80, both hemispheres 38.7
2619 Male, age 74, both hemispheres 33.9
2042 Male, age 76, both hemispheres 33.8
2729 Female, age 91, right hemisphere 31.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 25.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 25.6
Samples: 255

Max nTPM: 52.3
Min nTPM: 7.7
Std nTPM: 9.1
Median nTPM: 25.3
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 52.3
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 49.2
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 49.1
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 46.2
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 46.1
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 45.9
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 45.7
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 45.3
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 43.6
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 42.6
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 41.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 16.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 16.4
FF:10169-103B7 60 years, female 17.6
FF:10153-102I9 76 years, female 15.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 25.8
Pig sample Sample description nTPM
Subiculum
nTPM: 23.1
Samples: 4

Max nTPM: 30.4
Min nTPM: 19.8
Sample A Female 30.4
Sample B Female 19.9
Sample C Male 22.1
Sample D Male 19.8
Dorsal hippocampus
nTPM: 22.8
Samples: 4

Max nTPM: 28.8
Min nTPM: 19.5
Sample A Female 28.8
Sample B Female 21.7
Sample C Male 21.2
Sample D Male 19.5
Entorhinal cortex
nTPM: 25.8
Samples: 4

Max nTPM: 29.0
Min nTPM: 22.8
Sample A Female 27.6
Sample B Female 23.8
Sample C Male 29.0
Sample D Male 22.8
Ventral hippocampus
nTPM: 22.1
Samples: 4

Max nTPM: 28.1
Min nTPM: 16.2
Sample A Female 20.2
Sample B Female 16.2
Sample C Male 28.1
Sample D Male 23.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 16.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 16.4
Samples: 4

Max nTPM: 16.7
Min nTPM: 16.0
Sample A Male 16.5
Sample B Male 16.7
Sample C Female 16.0
Sample D Female 16.2
Hippocampal formation
nTPM: 16.5
Samples: 4

Max nTPM: 17.0
Min nTPM: 15.3
Sample A Male 15.3
Sample B Male 16.8
Sample C Female 17.0
Sample D Female 17.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 4.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.3
68920731 Antisense, RP_050303_01_B03, Mouse strain C57BL/6J (56 days, male) 4.3

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