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  • SUMMARY

  • TISSUE

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  • SUBCELL

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  • BLOOD

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  • STRUCTURE

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  • GCSH
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:82.2 nTPM
FANTOM5:19.4 Scaled Tags Per Million
Pig:28.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA041368Antibody HPA057079
Glial cells MediumHigh
Neuronal cells MediumHigh





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

82.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 82.2
Samples: 300

Max nTPM: 272.7
Min nTPM: 35.6
Std nTPM: 39.1
Median nTPM: 72.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 272.7
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 247.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 236.2
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 220.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 218.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 217.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 208.6
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 189.7
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 178.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 175.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 170.4
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 168.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 168.1
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 165.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 165.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 163.6
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 160.4
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 149.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 146.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 144.5
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 144.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 142.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 141.6
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 141.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 140.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 140.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 139.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 137.2
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 134.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 134.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 133.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 133.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 128.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 128.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 128.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 127.9
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 126.5
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 124.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 124.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 123.4
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 122.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 119.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 117.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 115.1
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 114.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 114.6
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 113.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 112.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 112.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 112.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 111.6
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 111.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 109.8
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 109.3
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 109.1
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 106.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 105.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 104.4
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 104.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 104.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 103.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 103.0
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 102.6
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 101.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 101.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 100.9
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 99.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 99.3
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 99.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 98.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 98.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 98.6
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 98.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 97.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 96.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 96.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 95.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 95.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 95.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 94.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 94.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 94.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 94.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 94.2
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 94.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 93.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 93.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 93.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 92.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 92.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 91.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 91.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 89.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 89.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 89.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 89.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 89.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 88.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 88.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 88.4
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 88.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 87.8
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 87.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 87.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 86.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 86.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 86.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 84.6
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 83.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 83.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 82.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 82.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 81.7
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 81.0
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 80.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 80.7
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 80.6
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 80.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 80.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 80.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 80.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 80.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 79.4
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 79.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 79.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 79.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 78.7
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 78.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 78.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 77.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 77.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 76.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 75.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 75.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 75.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 75.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 75.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 75.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 74.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 74.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 74.4
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 74.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 74.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 74.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 73.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 73.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 72.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 72.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 72.4
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 72.3
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 72.3
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 72.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 72.2
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 71.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 71.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 71.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 71.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 71.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 70.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 70.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 70.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 70.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 70.3
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 69.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 69.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 68.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 68.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 68.3
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 68.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 68.0
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 67.5
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 67.5
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 67.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 67.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 67.2
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 67.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 66.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 65.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 65.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 65.4
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 64.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 64.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 64.5
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 64.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 64.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 64.0
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 63.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 63.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 63.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 63.6
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 63.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 62.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 62.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 62.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 62.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 62.2
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 61.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 61.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 60.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 60.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 60.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 60.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 60.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 60.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 60.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 60.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 59.6
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 59.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 59.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 59.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 58.4
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 58.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 57.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 57.0
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 56.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 56.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 55.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 55.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 55.0
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 54.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 54.9
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 54.8
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 54.8
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 54.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 54.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 54.2
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 54.2
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 54.2
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 54.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 53.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 53.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 53.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 53.3
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 52.9
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 52.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 52.4
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 52.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 52.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 51.8
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 51.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 51.3
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 51.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 50.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 49.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 49.4
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 49.3
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 49.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 48.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 48.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 48.9
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 48.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 48.5
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 48.4
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 48.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 48.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 48.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 47.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 47.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 47.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 47.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 47.2
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 47.2
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 47.0
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 47.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 47.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 46.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 46.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 45.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 45.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 45.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 45.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 45.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 44.7
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 44.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 43.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 43.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 43.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 43.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 42.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 42.6
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 42.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 42.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 42.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 41.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 41.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 41.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 40.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 39.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 39.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 38.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 38.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 37.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 37.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 37.1
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 37.1
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 36.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 36.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 36.6
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 35.8
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 35.6
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

19.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 19.4
FF:10164-103B2 76 years, female 19.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

28.7
Pig sample Sample description nTPM
Caudate
nTPM: 28.7
Samples: 4

Max nTPM: 32.3
Min nTPM: 22.3
Sample A Female 32.3
Sample B Female 29.8
Sample C Male 30.2
Sample D Male 22.3

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