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RPS2
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  • TISSUE

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  • RPS2
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
Tissue methods
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1405.4 nTPM
HPA:822.9 nTPM
GTEx:1405.4 nTPM
FANTOM5:30.9 Scaled Tags Per Million
SMALL INTESTINE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA055133
Glandular cells Medium


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

822.9
overview
Male, age 65
Small intestine sample 232
nTPM: 1129.6
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 733.5
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 710.9
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 717.6

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1405.4
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 1405.4
Samples: 207

Max nTPM: 2554.8
Min nTPM: 680.3
Std nTPM: 407.6
Median nTPM: 1336.1
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 2554.8
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 2518.1
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 2460.7
GTEX-14PK6-1626-SM-6871I 70-79 years, female 2396.9
GTEX-183FY-1626-SM-793D8 20-29 years, male 2353.8
GTEX-1RQED-2826-SM-HLJQK 60-69 years, male 2289.1
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 2246.2
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 2209.4
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 2165.6
GTEX-1HKZK-2226-SM-GA91V 40-49 years, male 2163.2
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 2144.2
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 2111.1
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 2105.3
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 2060.4
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 2054.5
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 2053.4
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 2052.0
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 2034.9
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 2030.4
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 2029.2
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 2027.6
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 2022.5
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 1990.5
GTEX-13X6H-1826-SM-5O9D1 50-59 years, female 1978.4
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 1968.6
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 1953.5
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 1947.9
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 1925.2
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 1918.9
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 1881.3
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 1868.9
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 1864.9
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 1847.3
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 1827.8
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 1801.6
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 1797.4
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 1796.7
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 1790.8
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 1787.0
GTEX-1C475-1426-SM-793CH 40-49 years, female 1756.9
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 1756.5
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 1725.7
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 1723.5
GTEX-14PKU-1626-SM-6871C 40-49 years, female 1721.3
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 1705.6
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 1702.2
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 1685.9
GTEX-13O61-1326-SM-5KM31 60-69 years, male 1684.1
GTEX-1HSGN-2126-SM-GA8ZB 40-49 years, female 1677.5
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 1672.5
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 1670.1
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 1664.4
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 1661.0
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 1653.6
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 1636.1
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 1633.6
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 1632.4
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 1614.3
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 1613.6
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 1607.4
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 1606.9
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 1586.4
GTEX-1HCUA-1726-SM-GA8Z2 50-59 years, female 1584.9
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 1583.1
GTEX-1MCYP-1626-SM-HLJQ5 20-29 years, female 1578.8
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 1576.4
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 1576.4
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 1576.0
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 1564.4
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 1559.9
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 1559.2
GTEX-1M5QR-2226-SM-HLJRV 40-49 years, male 1555.9
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 1531.1
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 1526.1
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 1523.3
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 1520.6
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 1518.8
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 1508.4
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 1499.0
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 1492.5
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 1486.5
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 1481.5
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 1473.2
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 1469.5
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 1467.8
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 1454.2
GTEX-U8XE-2226-SM-HAUZQ 30-39 years, male 1454.0
GTEX-ZV7C-1426-SM-GNTB8 50-59 years, male 1449.5
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 1447.5
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 1443.0
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 1432.0
GTEX-WHPG-1826-SM-GNTAH 50-59 years, male 1426.7
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 1426.2
GTEX-1PFEY-1326-SM-HK791 30-39 years, male 1416.9
GTEX-W5X1-1926-SM-GOQYX 40-49 years, female 1394.6
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 1393.8
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 1383.3
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 1376.7
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 1376.7
GTEX-YJ8A-2126-SM-GQ1C7 20-29 years, male 1373.9
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 1358.6
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 1354.1
GTEX-117YX-0326-SM-5GICL 50-59 years, male 1341.2
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 1336.1
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 1315.1
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 1314.0
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 1313.8
GTEX-144GM-1026-SM-5O9AZ 20-29 years, male 1311.7
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 1310.7
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 1301.2
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 1301.2
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 1296.1
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 1292.2
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 1288.7
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 1287.7
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 1287.5
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 1287.0
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 1286.8
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 1281.1
GTEX-1192X-2526-SM-59868 50-59 years, male 1272.8
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 1265.7
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 1262.3
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 1254.4
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 1253.2
GTEX-13113-1226-SM-5EGHT 60-69 years, female 1247.7
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 1245.1
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 1233.1
GTEX-X4LF-1326-SM-HLJSD 50-59 years, male 1229.3
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 1229.2
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 1223.3
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 1218.0
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 1214.1
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 1211.6
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 1208.1
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1195.2
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 1193.5
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 1186.8
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 1177.9
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 1177.9
GTEX-XPT6-1026-SM-GOQYN 20-29 years, male 1176.0
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 1175.0
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 1173.5
GTEX-13111-1426-SM-5DUW3 50-59 years, male 1171.9
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 1169.4
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 1167.4
GTEX-1NHNU-2526-SM-HK79M 50-59 years, male 1166.0
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 1164.7
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 1162.3
GTEX-1S831-1526-SM-HLJQS 20-29 years, male 1145.8
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 1133.8
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 1124.0
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 1123.2
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 1118.0
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 1115.7
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 1108.4
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 1103.3
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 1083.1
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 1061.2
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 1058.9
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 1049.4
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 1048.2
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 1046.4
GTEX-1MA7W-0726-SM-HLJQU 20-29 years, female 1045.6
GTEX-ZT9X-1026-SM-HLJS2 40-49 years, male 1039.4
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1038.1
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 1036.6
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 1026.7
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 1024.7
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 1010.6
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 1010.1
GTEX-14PN3-2026-SM-68729 60-69 years, female 1009.6
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 1007.0
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 1005.9
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 1005.7
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 1000.1
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 996.2
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 989.8
GTEX-1HBPN-1926-SM-GA91H 50-59 years, male 988.8
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 982.9
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 967.0
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 958.4
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 958.0
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 946.5
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 938.1
GTEX-1122O-1326-SM-5H11F 60-69 years, female 919.7
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 908.3
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 907.8
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 904.3
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 901.1
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 896.1
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 889.5
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 889.2
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 884.1
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 870.1
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 843.7
GTEX-111YS-1426-SM-5GID8 60-69 years, male 840.2
GTEX-YFCO-1326-SM-664NV 40-49 years, male 827.6
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 801.7
GTEX-YB5K-1126-SM-H6Q6O 40-49 years, female 788.3
GTEX-ZPU1-1826-SM-GNTB3 40-49 years, male 778.2
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 744.1
GTEX-X3Y1-1526-SM-H6Q6X 40-49 years, male 729.5
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 723.6
GTEX-ZTSS-0926-SM-59865 40-49 years, male 718.2
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 714.3
GTEX-178AV-1226-SM-GOR11 40-49 years, male 683.0
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 680.3
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

30.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 30.9
FF:10024-101D6 15,40,85 years, mixed 30.9

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