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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:74.2 nTPM
HPA Brain:172.2 nTPM
GTEx:74.2 nTPM
FANTOM5:348.2 Scaled Tags Per Million
Pig:173.5 nTPM
Mouse:230.2 nTPM
Allen mouse:14.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

172.2
Sample id Sample description nTPM
Amygdala
nTPM: 172.2
2814 Male, age 76, right hemisphere 203.9
2514 Male, age 75, right hemisphere 195.8
1987 Female, age 91, left hemisphere 163.6
2695 Female, age 67, right hemisphere 157.7
2517 Female, age 94, left hemisphere 140.1
Basal amygdala
nTPM: 139.8
2609 Male, age 75, right hemisphere 163.0
2110 Male, age 80, left hemisphere 160.9
1955 Male, age 76, both hemispheres 155.9
2243 Female, age 91, right hemisphere 147.3
2685 Female, age 94, left hemisphere 127.5
2827 Female, age 67, right hemisphere 84.2
Central amygdala
nTPM: 149.5
1905 Male, age 76, both hemispheres 189.4
2515 Male, age 75, right hemisphere 160.9
2239 Male, age 80, left hemisphere 145.3
2701 Female, age 91, right hemisphere 132.6
2826 Female, age 94, left hemisphere 119.1
Corticomedial amygdala
nTPM: 149.9
2428 Male, age 75, right hemisphere 184.3
2829 Male, age 80, left hemisphere 174.5
2240 Male, age 76, both hemispheres 162.6
2429 Female, age 94, left hemisphere 152.3
2242 Female, age 91, right hemisphere 142.2
2535 Female, age 67, right hemisphere 83.4
Lateral amygdala
nTPM: 140.1
1883 Male, age 76, both hemispheres 213.0
2516 Male, age 75, right hemisphere 168.9
2534 Female, age 94, left hemisphere 129.5
2255 Female, age 91, right hemisphere 117.3
2256 Male, age 80, left hemisphere 114.0
2830 Female, age 67, right hemisphere 97.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

74.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 74.2
Samples: 181

Max nTPM: 142.9
Min nTPM: 20.0
Std nTPM: 21.0
Median nTPM: 73.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 142.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 133.1
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 132.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 121.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 118.0
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 114.9
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 113.8
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 112.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 112.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 109.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 108.9
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 108.5
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 108.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 108.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 107.7
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 104.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 104.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 103.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 102.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 102.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 102.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 100.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 99.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 97.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 96.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 96.5
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 96.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 95.2
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 95.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 94.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 92.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 92.3
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 91.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 91.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 91.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 90.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 90.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 89.6
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 89.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 88.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 88.7
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 88.0
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 88.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 87.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 86.9
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 86.7
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 86.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 85.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 85.3
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 84.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 84.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 83.7
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 83.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 83.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 82.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 81.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 81.3
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 81.1
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 81.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 80.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 80.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 80.4
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 80.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 80.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 80.2
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 80.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 79.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 79.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 79.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 79.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 78.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 78.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 78.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 78.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 78.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 77.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 77.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 77.3
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 77.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 77.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 76.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 76.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 76.2
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 75.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 75.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 74.7
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 74.4
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 74.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 74.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 73.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 73.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 73.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 73.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 73.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 72.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 72.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 72.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 71.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 71.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 71.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 70.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 70.9
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 70.7
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 70.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 69.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 69.3
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 68.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 68.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 68.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 68.1
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 68.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 67.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 66.8
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 66.5
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 66.4
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 66.2
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 65.7
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 65.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 65.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 65.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 63.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 63.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 63.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 62.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 62.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 62.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 61.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 61.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 60.2
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 60.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 59.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 59.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 59.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 59.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 59.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 58.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 58.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 58.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 57.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 57.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 57.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 56.9
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 56.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 56.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 55.7
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 55.3
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 55.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 54.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 54.6
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 54.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 53.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 53.7
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 53.7
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 52.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 52.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 51.0
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 50.6
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 50.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 49.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 49.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 49.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 49.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 48.5
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 47.4
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 46.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 46.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 45.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 45.5
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 45.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 44.9
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 44.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 43.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 41.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 40.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 40.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 40.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 38.7
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 37.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 36.3
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 34.8
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 20.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

348.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 348.2
FF:10151-102I7 76 years, female 348.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

173.5
Pig sample Sample description nTPM
Amygdala
nTPM: 173.5
Samples: 4

Max nTPM: 234.1
Min nTPM: 140.9
Sample A Female 234.1
Sample B Female 143.5
Sample C Male 140.9
Sample D Male 175.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

230.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 230.2
Samples: 4

Max nTPM: 254.1
Min nTPM: 212.7
Sample A Male 254.1
Sample B Male 212.7
Sample C Female 223.2
Sample D Female 230.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

14.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 14.8
69549024 Antisense, RP_050426_02_G06, Mouse strain C57BL/6J (56 days, male) 14.8

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