MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:59.8 nTPM
HPA Brain:68.6 nTPM
GTEx:59.8 nTPM
FANTOM5:94.0 Scaled Tags Per Million
Pig:10.3 nTPM
Mouse:4.0 nTPM
Allen mouse:1.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 68.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 58.1
2586 Male, age 75, left hemisphere 106.6
1870 Female, age 42, unknown 64.0
1830 Male, age 51, unknown 62.4
2411 Female, age 72, unknown 58.7
2019 Male, age 18, unknown 55.9
1833 Male, age 53, unknown 55.0
2828 Female, age 72, unknown 50.2
2666 Male, age 74, left hemisphere 47.4
1827 Male, age 72, unknown 42.9
2219 Male, age 76, both hemispheres 37.5
Dorsal raphe nucleus
nTPM: 39.5
2750 Male, age 76, both hemispheres 66.3
1828 Male, age 53, unknown 39.6
2016 Female, age 72, unknown 38.7
2047 Male, age 72, unknown 27.2
2298 Female, age 72, unknown 25.7
Inferior colliculus
nTPM: 38.6
1890 Male, age 53, unknown 42.3
1848 Female, age 42, unknown 39.9
2849 Male, age 72, unknown 38.0
2097 Female, age 72, unknown 34.4
Median raphe nucleus
nTPM: 32.3
2220 Male, age 76, midline 32.3
Periaquaductal grey, anterior
nTPM: 41.3
2502 Female, age 75, unknown 51.5
1795 Male, age 51, unknown 38.2
1947 Male, age 18, unknown 34.1
Periaquaductal grey, dorsal
nTPM: 28.3
2464 Female, age 72, unknown 40.6
1831 Male, age 72, unknown 29.2
1840 Male, age 53, unknown 27.6
2850 Male, age 76, both hemispheres 15.7
Periaquaductal grey, lateral
nTPM: 29.0
2053 Male, age 18, unknown 36.7
2272 Male, age 74, both hemispheres 32.1
2140 Male, age 76, both hemispheres 18.4
Pretectal area
nTPM: 37.2
2407 Male, age 75, both hemispheres 60.6
2007 Male, age 72, unknown 47.3
1815 Male, age 53, unknown 45.1
2316 Male, age 76, right hemisphere 41.0
1817 Female, age 42, unknown 39.6
2825 Male, age 18, unknown 36.7
2273 Male, age 74, both hemispheres 31.6
1816 Male, age 51, unknown 29.0
2224 Female, age 72, unknown 27.3
1944 Female, age 72, unknown 25.8
2667 Female, age 75, unknown 25.7
Red nucleus
nTPM: 68.6
2588 Male, age 74, left hemisphere 75.7
2584 Male, age 75, left hemisphere 75.4
2503 Female, age 72, unknown 74.4
2769 Male, age 72, unknown 73.9
2227 Male, age 72, unknown 73.5
1904 Male, age 53, unknown 71.2
1865 Male, age 51, unknown 68.6
1821 Female, age 72, unknown 67.7
2785 Male, age 18, unknown 66.8
2823 Male, age 76, right hemisphere 63.7
1954 Female, age 42, unknown 60.6
2725 Female, age 75, unknown 51.7
Substantia nigra
nTPM: 42.9
2583 Male, age 75, right hemisphere 68.9
1851 Male, age 51, unknown 52.7
2590 Female, age 75, unknown 50.7
2699 Male, age 18, unknown 43.6
1889 Female, age 72, unknown 43.4
2409 Female, age 72, unknown 37.3
2665 Male, age 74, both hemispheres 36.6
2241 Male, age 72, unknown 32.7
1916 Female, age 42, unknown 31.7
1941 Male, age 53, unknown 31.0
Superior colliculus
nTPM: 49.2
1995 Male, age 72, unknown 66.2
1913 Female, age 42, unknown 61.5
2668 Female, age 75, unknown 57.6
1796 Male, age 53, unknown 48.9
1839 Male, age 51, unknown 47.2
2587 Male, age 74, left hemisphere 46.5
2664 Male, age 75, both hemispheres 45.2
1895 Male, age 76, right hemisphere 43.7
2261 Male, age 18, unknown 42.0
2087 Female, age 72, unknown 33.5
Ventral tegmental area
nTPM: 45.1
2223 Female, age 72, unknown 60.4
2410 Female, age 72, unknown 51.6
1915 Female, age 42, unknown 42.6
1942 Male, age 51, unknown 41.9
2021 Male, age 53, unknown 37.9
2218 Male, age 76, both hemispheres 35.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 59.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 59.8
Samples: 183

Max nTPM: 169.8
Min nTPM: 15.8
Std nTPM: 28.0
Median nTPM: 52.7
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 169.8
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 156.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 151.9
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 141.1
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 136.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 125.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 125.3
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 123.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 120.3
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 118.8
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 117.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 94.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 94.0
FF:10158-103A5 76 years, female 94.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 10.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 6.9
Samples: 4

Max nTPM: 8.4
Min nTPM: 5.2
Sample A Female 8.4
Sample B Female 6.8
Sample C Male 7.2
Sample D Male 5.2
Midbrain
nTPM: 9.0
Samples: 4

Max nTPM: 13.2
Min nTPM: 5.6
Sample A Female 5.6
Sample B Female 6.4
Sample C Male 10.6
Sample D Male 13.2
Periaqueductal gray
nTPM: 6.5
Samples: 3

Max nTPM: 7.1
Min nTPM: 6.1
Sample B Female 6.1
Sample C Male 7.1
Sample D Male 6.4
Superior colliculi
nTPM: 10.3
Samples: 4

Max nTPM: 12.3
Min nTPM: 5.9
Sample A Female 11.5
Sample B Female 5.9
Sample C Male 11.5
Sample D Male 12.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 4.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 4.0
Samples: 4

Max nTPM: 4.3
Min nTPM: 3.7
Sample A Male 4.3
Sample B Male 4.0
Sample C Female 3.7
Sample D Female 4.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
69817874 Antisense, RP_050510_03_H06, Mouse strain C57BL/6J (56 days, male) 1.5

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