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  • ANAPC11
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:214.0 nTPM
HPA Brain:61.4 nTPM
GTEx:214.0 nTPM
FANTOM5:75.5 Scaled Tags Per Million
Pig:38.7 nTPM
Mouse:54.7 nTPM
Allen mouse:0.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

61.4
Sample id Sample description nTPM
Amygdala
nTPM: 61.4
2517 Female, age 94, left hemisphere 67.6
1987 Female, age 91, left hemisphere 63.9
2514 Male, age 75, right hemisphere 60.9
2814 Male, age 76, right hemisphere 57.5
2695 Female, age 67, right hemisphere 57.4
Basal amygdala
nTPM: 55.2
2609 Male, age 75, right hemisphere 62.5
2110 Male, age 80, left hemisphere 60.7
1955 Male, age 76, both hemispheres 53.0
2243 Female, age 91, right hemisphere 53.0
2685 Female, age 94, left hemisphere 52.6
2827 Female, age 67, right hemisphere 49.7
Central amygdala
nTPM: 61.3
2826 Female, age 94, left hemisphere 80.4
2515 Male, age 75, right hemisphere 69.9
1905 Male, age 76, both hemispheres 57.0
2239 Male, age 80, left hemisphere 53.7
2701 Female, age 91, right hemisphere 45.3
Corticomedial amygdala
nTPM: 55.3
2428 Male, age 75, right hemisphere 67.2
2829 Male, age 80, left hemisphere 64.6
2429 Female, age 94, left hemisphere 56.8
2242 Female, age 91, right hemisphere 52.2
2240 Male, age 76, both hemispheres 45.8
2535 Female, age 67, right hemisphere 45.0
Lateral amygdala
nTPM: 59.5
2516 Male, age 75, right hemisphere 77.8
2534 Female, age 94, left hemisphere 73.7
1883 Male, age 76, both hemispheres 56.6
2830 Female, age 67, right hemisphere 50.1
2256 Male, age 80, left hemisphere 49.8
2255 Female, age 91, right hemisphere 48.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

214.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 214.0
Samples: 181

Max nTPM: 786.1
Min nTPM: 100.9
Std nTPM: 78.0
Median nTPM: 202.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 786.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 510.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 499.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 456.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 441.8
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 409.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 342.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 340.2
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 333.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 329.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 315.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 315.3
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 311.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 310.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 309.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 306.9
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 294.2
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 290.1
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 289.4
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 284.2
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 279.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 274.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 265.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 265.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 259.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 257.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 255.9
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 255.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 255.0
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 254.1
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 253.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 250.7
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 250.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 249.5
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 249.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 249.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 248.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 248.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 247.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 247.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 246.1
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 244.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 243.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 242.8
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 241.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 238.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 236.9
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 236.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 236.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 236.0
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 235.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 233.3
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 233.1
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 231.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 231.6
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 230.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 229.3
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 228.2
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 228.1
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 224.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 223.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 223.5
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 223.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 222.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 220.2
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 219.3
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 219.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 218.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 217.8
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 217.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 217.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 217.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 216.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 216.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 215.4
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 213.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 210.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 209.8
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 209.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 209.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 208.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 208.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 207.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 206.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 206.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 205.9
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 205.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 205.7
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 203.6
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 202.0
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 202.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 201.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 201.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 200.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 197.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 197.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 196.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 196.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 196.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 195.4
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 195.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 195.1
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 193.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 192.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 191.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 189.8
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 187.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 187.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 187.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 184.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 184.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 183.6
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 183.5
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 183.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 182.6
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 181.2
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 181.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 180.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 180.2
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 179.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 178.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 177.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 176.7
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 176.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 175.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 175.5
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 174.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 174.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 173.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 172.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 171.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 171.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 170.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 170.5
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 169.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 168.0
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 167.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 166.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 165.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 165.0
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 164.5
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 164.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 164.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 163.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 163.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 162.4
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 159.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 157.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 157.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 156.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 156.4
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 153.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 153.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 152.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 150.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 149.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 149.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 147.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 146.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 145.9
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 145.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 144.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 143.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 143.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 142.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 141.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 141.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 140.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 140.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 139.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 134.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 132.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 131.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 129.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 126.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 123.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 121.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 121.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 114.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 103.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 100.9
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

75.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 75.5
FF:10151-102I7 76 years, female 75.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

38.7
Pig sample Sample description nTPM
Amygdala
nTPM: 38.7
Samples: 4

Max nTPM: 47.5
Min nTPM: 29.2
Sample A Female 47.5
Sample B Female 36.2
Sample C Male 41.8
Sample D Male 29.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

54.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 54.8
Samples: 4

Max nTPM: 59.2
Min nTPM: 50.9
Sample A Male 50.9
Sample B Male 54.9
Sample C Female 59.2
Sample D Female 54.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.3
70445580 Antisense, RP_050614_04_B05, Mouse strain C57BL/6J (56 days, male) 0.3

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