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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
22.0
nTPM
Monaco:
74.3
nTPM
Schmiedel:
155.7
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
22.0
HPA sample
nTPM
gdT-cell nTPM: 22.0
Samples: 6
Max nTPM: 27.9
Min nTPM: 16.6
P10809_1007
16.6
P10809_1022
22.6
P10809_1041
27.9
P10809_1060
22.6
P10809_1077
22.0
P10809_1098
20.5
MAIT T-cell nTPM: 15.8
Samples: 6
Max nTPM: 19.2
Min nTPM: 12.5
P10809_1006
12.5
P10809_1024
17.3
P10809_1043
19.2
P10809_1062
13.7
P10809_1083
16.6
P10809_1097
15.3
Memory CD4 T-cell nTPM: 16.2
Samples: 6
Max nTPM: 21.6
Min nTPM: 11.9
P10809_1014
11.9
P10809_1026
21.6
P10809_1045
17.9
P10809_1064
13.0
P10809_1086
15.7
P10809_1113
16.9
Memory CD8 T-cell nTPM: 19.3
Samples: 5
Max nTPM: 23.6
Min nTPM: 14.2
P10809_1012
14.2
P10809_1027
20.3
P10809_1046
22.5
P10809_1065
15.7
P10809_1111
23.6
Naive CD4 T-cell nTPM: 17.3
Samples: 6
Max nTPM: 22.1
Min nTPM: 11.7
P10809_1015
11.7
P10809_1030
21.8
P10809_1049
17.8
P10809_1068
11.8
P10809_1085
22.1
P10809_1112
18.6
Naive CD8 T-cell nTPM: 15.6
Samples: 6
Max nTPM: 23.1
Min nTPM: 8.4
P10809_1016
12.5
P10809_1031
8.4
P10809_1050
23.1
P10809_1069
19.1
P10809_1087
17.4
P10809_1110
13.3
T-reg nTPM: 14.5
Samples: 6
Max nTPM: 22.8
Min nTPM: 5.6
P10809_1018
10.9
P10809_1037
20.0
P10809_1056
22.8
P10809_1075
5.6
P10809_1094
11.9
P10809_1106
15.9
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
74.3
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 66.4
Samples: 4
Max nTPM: 74.2
Min nTPM: 53.2
RHH5202_R3573
53.2
RHH5230_R3602
73.9
RHH5259_R3631
74.2
RHH5288_R3660
64.4
Effector memory CD8 T-cell nTPM: 74.3
Samples: 4
Max nTPM: 78.7
Min nTPM: 70.5
RHH5203_R3574
78.7
RHH5231_R3603
73.2
RHH5260_R3632
70.5
RHH5289_R3661
74.8
MAIT T-cell nTPM: 63.8
Samples: 4
Max nTPM: 78.0
Min nTPM: 46.0
RHH5233_R3605
63.3
RHH5205_R3576
78.0
RHH5262_R3634
67.9
RHH5297_R3663
46.0
Memory CD4 T-cell TFH nTPM: 54.7
Samples: 4
Max nTPM: 67.1
Min nTPM: 43.6
RHH5300_R3666
43.6
RHH5236_R3608
67.1
RHH5265_R3637
56.4
RHH5208_R3579
51.6
Memory CD4 T-cell Th1 nTPM: 71.0
Samples: 4
Max nTPM: 79.5
Min nTPM: 62.8
RHH5210_R3581
71.2
RHH5302_R3668
62.8
RHH5238_R3610
70.5
RHH5267_R3639
79.5
Memory CD4 T-cell Th1/Th17 nTPM: 57.5
Samples: 4
Max nTPM: 68.3
Min nTPM: 52.0
RHH5303_R3669
53.7
RHH5211_R3582
52.0
RHH5239_R3611
68.3
RHH5268_R3640
55.8
Memory CD4 T-cell Th17 nTPM: 54.8
Samples: 4
Max nTPM: 76.4
Min nTPM: 43.8
RHH5304_R3670
43.8
RHH5212_R3583
52.3
RHH5240_R3612
76.4
RHH5269_R3641
46.6
Memory CD4 T-cell Th2 nTPM: 57.9
Samples: 4
Max nTPM: 67.5
Min nTPM: 45.7
RHH5305_R3671
45.7
RHH5213_R3584
61.5
RHH5241_R3613
56.7
RHH5270_R3642
67.5
Naive CD4 T-cell nTPM: 66.6
Samples: 4
Max nTPM: 83.5
Min nTPM: 57.1
RHH5306_R3672
63.4
RHH5214_R3585
62.2
RHH5242_R3614
57.1
RHH5271_R3643
83.5
Naive CD8 T-cell nTPM: 58.5
Samples: 4
Max nTPM: 64.8
Min nTPM: 54.7
RHH5201_R3572
54.7
RHH5229_R3601
58.2
RHH5258_R3630
64.8
RHH5287_R3659
56.3
Non-Vd2 gdTCR nTPM: 72.0
Samples: 4
Max nTPM: 83.6
Min nTPM: 65.4
RHH5235_R3607
83.6
RHH5264_R3636
66.7
RHH5207_R3578
65.4
RHH5299_R3665
72.1
T-reg nTPM: 57.5
Samples: 4
Max nTPM: 65.0
Min nTPM: 52.3
RHH5301_R3667
52.3
RHH5237_R3609
65.0
RHH5266_R3638
59.9
RHH5209_R3580
52.6
Terminal effector memory CD4 T-cell nTPM: 67.9
Samples: 2
Max nTPM: 71.0
Min nTPM: 64.7
RHH5243_R3615
71.0
RHH5272_R3644
64.7
Terminal effector memory CD8 T-cell nTPM: 73.8
Samples: 4
Max nTPM: 86.4
Min nTPM: 57.8
RHH5232_R3604
77.2
RHH5204_R3575
73.6
RHH5261_R3633
57.8
RHH5296_R3662
86.4
Vd2 gdTCR nTPM: 59.3
Samples: 4
Max nTPM: 74.4
Min nTPM: 50.8
RHH5234_R3606
74.4
RHH5206_R3577
59.8
RHH5263_R3635
50.8
RHH5298_R3664
52.2
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
