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COL6A1
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  • COL6A1
TISSUE PRIMARY DATA OVARY Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Ovary
Tissue proteome
Ovary
Tissue methods
OVARY - Expression summary
Protein expression
Ovaryi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Follicle cells: Not detected
Ovarian stroma cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:470.1 nTPM
HPA:345.7 nTPM
GTEx:470.1 nTPM
FANTOM5:710.0 Scaled Tags Per Million
OVARY - SINGLE CELL RNA EXPRESSION
Explore single cell type data

OVARY - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA019142Antibody HPA029401
Follicle cells -Not detected
Ovarian stroma cells MediumNot detected





OVARY - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

345.7
overview
Female, age 64
Ovary sample 192
nTPM: 230.1
Cell types%
Stromal cells:
70

Smooth muscle cells:
15

Other cell types:
15

overview
Female, age 52
Ovary sample 193
nTPM: 374.6
Cell types%
Stromal cells:
95

Other cell types:
5

overview
Female, age 80
Ovary sample 308
nTPM: 109
Cell types%
Stromal cells:
70

Smooth muscle cells:
25

Other cell types:
5

N/A
Female, age 7
Ovary sample 3662
nTPM: 375.6
N/A
Female, age 16
Ovary sample 3663
nTPM: 209.7
N/A
Female, age 20
Ovary sample 3664
nTPM: 449.4
N/A
Female, age 32
Ovary sample 3665
nTPM: 671.8

OVARY - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

470.1
GTEx sample id Sample description nTPM
Ovary
Average nTPM: 470.1
Samples: 193

Max nTPM: 999.5
Min nTPM: 174.0
Std nTPM: 157.2
Median nTPM: 457.7
GTEX-T5JW-0426-SM-4DM7M 20-29 years, female 999.5
GTEX-UJHI-1226-SM-4IHLR 50-59 years, female 989.7
GTEX-XUZC-1026-SM-4BOPY 30-39 years, female 964.7
GTEX-ZP4G-0626-SM-4WWF1 20-29 years, female 950.5
GTEX-12WSJ-1226-SM-5LU91 40-49 years, female 887.7
GTEX-1LGOU-1026-SM-DHXL4 20-29 years, female 866.9
GTEX-SE5C-0826-SM-HL9T7 40-49 years, female 852.8
GTEX-PWN1-2426-SM-48TDD 40-49 years, female 849.3
GTEX-14JG6-0626-SM-68716 30-39 years, female 803.6
GTEX-1R9PN-0626-SM-E6CR9 40-49 years, female 783.0
GTEX-S341-0726-SM-4AD5R 40-49 years, female 780.5
GTEX-1RNTQ-1726-SM-F2I39 20-29 years, female 763.6
GTEX-XYKS-1726-SM-4E3IO 60-69 years, female 739.7
GTEX-WXYG-1426-SM-4ONCK 50-59 years, female 725.0
GTEX-12WSK-1926-SM-5LZVK 40-49 years, female 696.5
GTEX-13O3O-2726-SM-5KM35 60-69 years, female 691.8
GTEX-1HSGN-2426-SM-C1YRI 40-49 years, female 672.7
GTEX-X8HC-2726-SM-46MUA 50-59 years, female 665.8
GTEX-14PKU-1226-SM-686ZM 40-49 years, female 650.9
GTEX-QCQG-1426-SM-48U22 50-59 years, female 649.9
GTEX-ZLWG-0926-SM-4WWC3 50-59 years, female 639.7
GTEX-1AMFI-1426-SM-731EL 50-59 years, female 629.9
GTEX-ZYFG-1726-SM-5GZZB 60-69 years, female 622.8
GTEX-13VXT-1526-SM-5LU3J 20-29 years, female 621.2
GTEX-TML8-0926-SM-4DXSJ 40-49 years, female 616.8
GTEX-1GN1W-1426-SM-9JGHP 50-59 years, female 613.1
GTEX-17JCI-2326-SM-7IGPC 60-69 years, female 611.8
GTEX-1PBJI-2026-SM-DPRYF 20-29 years, female 610.4
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 601.3
GTEX-PWCY-1326-SM-48TCU 20-29 years, female 601.2
GTEX-11P81-1526-SM-5P9GS 30-39 years, female 598.2
GTEX-1QEPI-2726-SM-DPRZ6 60-69 years, female 597.2
GTEX-1PIEJ-1626-SM-E6CP9 20-29 years, female 593.2
GTEX-1LNCM-0926-SM-DHXK5 50-59 years, female 589.8
GTEX-ZVT2-0326-SM-5E44G 50-59 years, female 583.2
GTEX-13QBU-1526-SM-5LU3W 40-49 years, female 577.3
GTEX-S4P3-0926-SM-4AD54 50-59 years, female 575.7
GTEX-ZZPU-2126-SM-5EGIU 50-59 years, female 575.6
GTEX-1NUQO-1726-SM-HK7A8 20-29 years, female 574.5
GTEX-1KANC-1026-SM-D3LAA 50-59 years, female 571.2
GTEX-1LVAM-1826-SM-DHXKR 50-59 years, female 569.3
GTEX-1313W-2726-SM-5P9IX 50-59 years, female 563.1
GTEX-1IDJE-1126-SM-A96SO 50-59 years, female 563.0
GTEX-OHPL-2426-SM-48TDN 60-69 years, female 562.4
GTEX-1JN76-1426-SM-AHZ4F 20-29 years, female 561.1
GTEX-X15G-1726-SM-4PQZN 50-59 years, female 560.2
GTEX-ZVT3-2626-SM-5GU5L 60-69 years, female 556.6
GTEX-YFC4-2726-SM-5IFJW 40-49 years, female 556.5
GTEX-14PJM-2426-SM-686ZC 50-59 years, female 556.3
GTEX-RU1J-0826-SM-46MUU 20-29 years, female 555.6
GTEX-14DAQ-2226-SM-5YYAD 60-69 years, female 553.0
GTEX-QDT8-2226-SM-EZ6LT 30-39 years, female 551.1
GTEX-11I78-1926-SM-59878 50-59 years, female 546.8
GTEX-POMQ-1426-SM-3P61D 20-29 years, female 546.0
GTEX-14PKV-1226-SM-6871T 20-29 years, female 545.9
GTEX-11VI4-1026-SM-5EQM1 40-49 years, female 544.3
GTEX-1HBPH-2726-SM-A96TW 40-49 years, female 543.1
GTEX-131YS-2226-SM-5P9G8 60-69 years, female 531.5
GTEX-1OJC4-2026-SM-E6CQW 50-59 years, female 530.7
GTEX-15ER7-2326-SM-7KUN3 20-29 years, female 530.5
GTEX-XUW1-0126-SM-4BOOQ 50-59 years, female 529.4
GTEX-1MCYP-1426-SM-F2I3H 20-29 years, female 519.7
GTEX-W5WG-0926-SM-4RTX9 50-59 years, female 519.1
GTEX-13W3W-1526-SM-5LU5I 60-69 years, female 518.7
GTEX-15DYW-2626-SM-6LPK7 60-69 years, female 517.7
GTEX-P4QT-2426-SM-3NMCL 50-59 years, female 514.9
GTEX-1ICG6-1526-SM-C1YQT 70-79 years, female 512.5
GTEX-RWS6-1026-SM-47JXD 60-69 years, female 506.3
GTEX-14BIN-1426-SM-664NI 50-59 years, female 504.6
GTEX-TMMY-1726-SM-4DXTD 40-49 years, female 503.6
GTEX-RTLS-2326-SM-46MUH 60-69 years, female 500.4
GTEX-Y114-1726-SM-4TT7U 50-59 years, female 499.7
GTEX-11DXX-1426-SM-5GIDU 60-69 years, female 496.8
GTEX-XMD3-2326-SM-4AT5H 50-59 years, female 490.1
GTEX-PLZ4-2826-SM-3P617 50-59 years, female 489.9
GTEX-1QPFJ-1726-SM-EXOJU 30-39 years, female 489.8
GTEX-145ME-1226-SM-5MR87 40-49 years, female 488.5
GTEX-14AS3-1326-SM-5RQJE 40-49 years, female 487.2
GTEX-12WSD-2726-SM-59HLR 60-69 years, female 485.1
GTEX-145LS-2326-SM-5TDCY 60-69 years, female 484.5
GTEX-1CAMS-2126-SM-7MXTF 40-49 years, female 481.6
GTEX-1EWIQ-2226-SM-7MGXJ 70-79 years, female 480.9
GTEX-1K9T9-2426-SM-DHXKT 50-59 years, female 478.6
GTEX-12ZZX-2026-SM-5LZV9 40-49 years, female 475.8
GTEX-1QP28-1326-SM-DPRXZ 50-59 years, female 475.8
GTEX-PX3G-2426-SM-48TZZ 20-29 years, female 474.6
GTEX-QVJO-3126-SM-COH22 60-69 years, female 474.2
GTEX-13QIC-1526-SM-5IJFL 60-69 years, female 473.7
GTEX-18D9A-0826-SM-718C1 30-39 years, female 470.9
GTEX-T6MO-1126-SM-4DM5D 40-49 years, female 469.2
GTEX-1F52S-2226-SM-7MXVE 60-69 years, female 468.9
GTEX-1399S-2126-SM-G8OM9 30-39 years, female 468.2
GTEX-1F5PL-1626-SM-7MXTY 40-49 years, female 467.9
GTEX-11XUK-1626-SM-5GU5O 40-49 years, female 465.6
GTEX-T2IS-2026-SM-4DM6W 20-29 years, female 464.8
GTEX-1J1OQ-1626-SM-CE6TB 40-49 years, female 459.1
GTEX-14PN3-1526-SM-6ETZM 60-69 years, female 457.7
GTEX-1R9JW-1226-SM-F2I1P 30-39 years, female 456.8
GTEX-16NGA-0426-SM-7LG6K 40-49 years, female 451.8
GTEX-1H1CY-1926-SM-9WG7X 60-69 years, female 449.0
GTEX-1MA7W-1426-SM-EV7A1 20-29 years, female 447.9
GTEX-1I4MK-1526-SM-CE6T1 50-59 years, female 445.5
GTEX-1IKOE-2326-SM-A8N99 30-39 years, female 443.9
GTEX-131XW-2726-SM-HL9U9 50-59 years, female 442.0
GTEX-13D11-1126-SM-5KLYS 50-59 years, female 440.5
GTEX-1B933-2126-SM-7MGXR 50-59 years, female 440.5
GTEX-W5X1-2026-SM-GPRX9 40-49 years, female 435.4
GTEX-13PVR-1226-SM-5RQJ2 60-69 years, female 434.6
GTEX-13X6H-1026-SM-5MR8F 50-59 years, female 430.2
GTEX-P78B-1926-SM-3P616 40-49 years, female 430.2
GTEX-ZPIC-1426-SM-4WWCP 40-49 years, female 425.3
GTEX-1LKK1-1626-SM-EVR4Y 50-59 years, female 424.4
GTEX-1A32A-2726-SM-73KVU 50-59 years, female 420.4
GTEX-1C475-0426-SM-7P8OU 40-49 years, female 416.5
GTEX-11ZTT-1826-SM-5CVLN 60-69 years, female 414.9
GTEX-13SLX-2426-SM-664OM 50-59 years, female 414.8
GTEX-1269C-1826-SM-5N9E1 60-69 years, female 414.2
GTEX-1AMEY-0926-SM-72D6G 30-39 years, female 413.7
GTEX-1IDJU-1126-SM-A9G2S 60-69 years, female 413.4
GTEX-Q734-0726-SM-48TZP 40-49 years, female 410.9
GTEX-SN8G-2426-SM-EVR31 50-59 years, female 410.3
GTEX-11EM3-1726-SM-5N9D1 20-29 years, female 409.3
GTEX-Y3IK-2026-SM-4YCDG 50-59 years, female 409.3
GTEX-15SHU-2726-SM-HAV2W 40-49 years, female 408.6
GTEX-15FZZ-0826-SM-6LLJO 30-39 years, female 407.6
GTEX-WEY5-0626-SM-4LMIA 40-49 years, female 402.5
GTEX-WYVS-1526-SM-4OND4 40-49 years, female 401.7
GTEX-1HCUA-1326-SM-9WPP6 50-59 years, female 400.1
GTEX-13PL7-2326-SM-5L3FY 60-69 years, female 398.7
GTEX-131XG-1926-SM-5LZVG 50-59 years, female 392.4
GTEX-133LE-1226-SM-5IFGC 20-29 years, female 392.1
GTEX-YJ8O-1026-SM-5CVM5 40-49 years, female 391.6
GTEX-U3ZN-1026-SM-4DXTC 30-39 years, female 390.8
GTEX-15UF6-2026-SM-6LPI3 70-79 years, female 389.3
GTEX-1J8JJ-0826-SM-AHZ3F 60-69 years, female 387.0
GTEX-13OVJ-2426-SM-5KM3I 50-59 years, female 380.7
GTEX-ZC5H-2026-SM-5CVN2 40-49 years, female 380.5
GTEX-TSE9-2226-SM-4DXUR 60-69 years, female 378.5
GTEX-ZE7O-2226-SM-GNTC2 50-59 years, female 373.8
GTEX-1S5ZU-2326-SM-EAZ5B 20-29 years, female 372.5
GTEX-146FH-2526-SM-5Q5BP 50-59 years, female 368.9
GTEX-11GSP-0226-SM-5A5KV 60-69 years, female 368.4
GTEX-15EOM-1526-SM-68723 20-29 years, female 365.3
GTEX-WYBS-2426-SM-4ONDI 60-69 years, female 364.7
GTEX-S7SF-1326-SM-4AD4P 20-29 years, female 363.7
GTEX-14BMU-1726-SM-5TDE8 20-29 years, female 361.3
GTEX-OHPK-2426-SM-3MJGH 50-59 years, female 360.3
GTEX-11ZVC-1426-SM-5EGGA 50-59 years, female 360.0
GTEX-1IE54-2126-SM-GA8ZX 40-49 years, female 356.1
GTEX-R55G-1526-SM-48FER 40-49 years, female 354.5
GTEX-X4EO-2426-SM-4QASD 60-69 years, female 353.5
GTEX-RU72-2226-SM-46MUE 50-59 years, female 351.3
GTEX-1RDX4-0826-SM-E9TK7 50-59 years, female 340.3
GTEX-13FTX-0926-SM-5IFF7 20-29 years, female 338.6
GTEX-13U4I-2126-SM-5LU55 40-49 years, female 338.6
GTEX-13OVI-0726-SM-5L3DD 60-69 years, female 337.9
GTEX-P4PP-2426-SM-3P61L 30-39 years, female 333.6
GTEX-1I1CD-2026-SM-GA91R 60-69 years, female 329.1
GTEX-OHPN-1626-SM-GNTBJ 60-69 years, female 328.4
GTEX-1LGRB-2326-SM-CNNPU 50-59 years, female 327.8
GTEX-18A7A-2626-SM-7LG6L 50-59 years, female 325.8
GTEX-15SDE-0926-SM-6LPIA 50-59 years, female 324.7
GTEX-139D8-2426-SM-5KM3A 30-39 years, female 323.0
GTEX-ZAJG-2726-SM-5S2MU 50-59 years, female 318.7
GTEX-XV7Q-1426-SM-4BRWA 40-49 years, female 315.6
GTEX-13N11-0526-SM-5IJFI 50-59 years, female 313.1
GTEX-1F88E-2026-SM-7MXVP 60-69 years, female 311.4
GTEX-WI4N-2526-SM-4M9QQ 40-49 years, female 303.5
GTEX-1QP67-1526-SM-E76P4 40-49 years, female 301.5
GTEX-1399U-1726-SM-5P9J4 50-59 years, female 296.9
GTEX-11EMC-1726-SM-5H11P 60-69 years, female 291.6
GTEX-12WSG-1426-SM-5FQUK 50-59 years, female 288.0
GTEX-ZYY3-2726-SM-5EGH4 60-69 years, female 287.6
GTEX-15DDE-2326-SM-6AJA8 50-59 years, female 283.8
GTEX-1MCC2-1026-SM-EVR5I 30-39 years, female 281.6
GTEX-16NPV-2326-SM-HL9UF 50-59 years, female 271.7
GTEX-WWYW-2726-SM-4MVOP 50-59 years, female 259.6
GTEX-1JN1M-2126-SM-D4P2X 60-69 years, female 256.0
GTEX-183WM-1926-SM-72D5F 70-79 years, female 253.3
GTEX-1GZHY-2426-SM-9JGGK 50-59 years, female 252.4
GTEX-1F6RS-2726-SM-7MKHA 60-69 years, female 251.4
GTEX-ZTPG-1926-SM-HAUZ1 20-29 years, female 250.8
GTEX-16MT8-2226-SM-6LPK2 60-69 years, female 249.6
GTEX-145MI-2626-SM-5QGQ8 60-69 years, female 247.3
GTEX-1A8FM-2226-SM-7PC1C 50-59 years, female 241.4
GTEX-R45C-2526-SM-GRR28 60-69 years, female 240.4
GTEX-S32W-1226-SM-4AD67 50-59 years, female 239.5
GTEX-1F48J-2326-SM-7MKG3 50-59 years, female 238.6
GTEX-17F9Y-2226-SM-HL9UK 70-79 years, female 227.6
GTEX-11ZTS-1926-SM-5CVLA 60-69 years, female 224.4
GTEX-1H2FU-2326-SM-9WG7R 60-69 years, female 221.2
GTEX-13NZ8-2526-SM-H65ZM 60-69 years, female 186.2
GTEX-132AR-1426-SM-5IFF1 50-59 years, female 174.0
Show allShow less

OVARY - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

710.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Ovary
Scaled Tags Per Million: 710.0
FF:10020-101D2 47,75,84 years, female 710.0

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