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  • TISSUE

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  • SOD1
BRAIN MIDBRAIN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Midbrain
Brain methods
MIDBRAIN - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:648.4 nTPM
HPA Brain:367.9 nTPM
GTEx:648.4 nTPM
FANTOM5:709.0 Scaled Tags Per Million
Pig:123.8 nTPM
Mouse:522.0 nTPM
Allen mouse:4.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

367.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 258.9
2411 Female, age 72, unknown 313.2
1827 Male, age 72, unknown 303.4
2019 Male, age 18, unknown 274.4
1870 Female, age 42, unknown 270.2
2219 Male, age 76, both hemispheres 266.5
2828 Female, age 72, unknown 262.9
1833 Male, age 53, unknown 248.7
2666 Male, age 74, left hemisphere 246.6
1830 Male, age 51, unknown 235.5
2586 Male, age 75, left hemisphere 167.4
Dorsal raphe nucleus
nTPM: 331.2
2298 Female, age 72, unknown 396.8
2047 Male, age 72, unknown 353.9
1828 Male, age 53, unknown 323.1
2750 Male, age 76, both hemispheres 322.9
2016 Female, age 72, unknown 259.3
Inferior colliculus
nTPM: 241.6
2097 Female, age 72, unknown 267.1
1890 Male, age 53, unknown 239.0
1848 Female, age 42, unknown 235.3
2849 Male, age 72, unknown 225.0
Median raphe nucleus
nTPM: 365.9
2220 Male, age 76, midline 365.9
Periaquaductal grey, anterior
nTPM: 270.8
1947 Male, age 18, unknown 313.0
1795 Male, age 51, unknown 262.2
2502 Female, age 75, unknown 237.1
Periaquaductal grey, dorsal
nTPM: 243.1
2850 Male, age 76, both hemispheres 285.5
1840 Male, age 53, unknown 255.9
2464 Female, age 72, unknown 226.6
1831 Male, age 72, unknown 204.3
Periaquaductal grey, lateral
nTPM: 253.0
2272 Male, age 74, both hemispheres 267.8
2140 Male, age 76, both hemispheres 253.8
2053 Male, age 18, unknown 237.3
Pretectal area
nTPM: 290.5
1817 Female, age 42, unknown 331.9
1816 Male, age 51, unknown 327.7
1944 Female, age 72, unknown 316.3
2667 Female, age 75, unknown 315.8
2007 Male, age 72, unknown 315.4
2273 Male, age 74, both hemispheres 304.5
2224 Female, age 72, unknown 292.4
1815 Male, age 53, unknown 283.5
2825 Male, age 18, unknown 255.1
2407 Male, age 75, both hemispheres 238.7
2316 Male, age 76, right hemisphere 214.3
Red nucleus
nTPM: 265.7
1821 Female, age 72, unknown 368.8
2725 Female, age 75, unknown 336.6
1954 Female, age 42, unknown 290.3
2823 Male, age 76, right hemisphere 273.1
1865 Male, age 51, unknown 268.0
2503 Female, age 72, unknown 260.7
1904 Male, age 53, unknown 252.1
2785 Male, age 18, unknown 249.9
2769 Male, age 72, unknown 249.2
2227 Male, age 72, unknown 240.7
2588 Male, age 74, left hemisphere 201.5
2584 Male, age 75, left hemisphere 197.5
Substantia nigra
nTPM: 367.9
1916 Female, age 42, unknown 515.7
2241 Male, age 72, unknown 467.7
1941 Male, age 53, unknown 437.7
1851 Male, age 51, unknown 415.1
1889 Female, age 72, unknown 367.7
2409 Female, age 72, unknown 364.4
2699 Male, age 18, unknown 353.6
2665 Male, age 74, both hemispheres 279.6
2590 Female, age 75, unknown 260.9
2583 Male, age 75, right hemisphere 216.2
Superior colliculus
nTPM: 245.1
2587 Male, age 74, left hemisphere 299.1
1895 Male, age 76, right hemisphere 272.4
1796 Male, age 53, unknown 267.9
2668 Female, age 75, unknown 266.5
2087 Female, age 72, unknown 264.8
2261 Male, age 18, unknown 246.3
1839 Male, age 51, unknown 224.0
1913 Female, age 42, unknown 217.7
2664 Male, age 75, both hemispheres 201.7
1995 Male, age 72, unknown 190.2
Ventral tegmental area
nTPM: 330.3
2410 Female, age 72, unknown 389.7
1915 Female, age 42, unknown 389.1
2218 Male, age 76, both hemispheres 374.4
1942 Male, age 51, unknown 289.1
2223 Female, age 72, unknown 288.5
2021 Male, age 53, unknown 251.1

MIDBRAIN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

648.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 648.4
Samples: 183

Max nTPM: 1384.3
Min nTPM: 305.3
Std nTPM: 190.0
Median nTPM: 604.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 1384.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 1236.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 1215.4
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 1181.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 1160.4
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 1134.4
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 1104.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 1083.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 1063.5
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 1045.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 986.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 983.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 978.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 977.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 970.1
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 940.8
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 927.3
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 918.4
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 906.3
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 903.0
GTEX-111FC-0011-R2a-SM-GIN8S 60-69 years, male 897.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 897.0
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 883.0
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 876.1
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 871.1
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 866.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 861.0
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 859.8
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 853.6
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 826.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 824.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 809.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 805.8
GTEX-1QMI2-0011-R2b-SM-F648R 60-69 years, male 803.3
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 802.2
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 780.4
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 773.8
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 762.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 759.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 758.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 755.8
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 748.7
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 747.3
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 745.1
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 740.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 739.0
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 737.3
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 727.9
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 725.0
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 720.9
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 712.3
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 708.8
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 702.7
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 699.9
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 698.9
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 696.0
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 695.1
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 684.5
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 684.5
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 674.3
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 673.2
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 670.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 666.4
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 666.2
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 665.8
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 665.6
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 663.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 658.4
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 655.0
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 647.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 646.9
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 646.8
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 646.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 646.5
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 644.8
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 643.8
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 641.0
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 639.3
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 639.3
GTEX-1N2EE-0011-R2a-SM-F649F 60-69 years, male 639.1
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 631.6
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 628.9
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 618.9
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 617.9
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 615.5
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 614.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 614.3
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 614.2
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 614.0
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 611.9
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 608.1
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 604.9
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 601.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 599.2
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 597.2
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 595.2
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 595.1
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 588.7
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 587.1
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 585.9
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 584.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 582.7
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 578.2
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 577.3
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 575.7
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 575.6
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 573.4
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 564.3
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 561.3
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 561.0
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 560.7
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 559.3
GTEX-1RQED-0011-R2a-SM-F3K5T 60-69 years, male 556.4
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 553.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 552.7
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 549.0
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 548.8
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 548.0
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 545.1
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 544.9
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 544.1
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 543.8
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 541.1
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 538.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 538.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 537.6
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 535.4
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 533.9
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 533.8
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 527.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 525.3
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 525.2
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 524.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 523.1
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 522.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 521.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 518.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 518.7
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 517.9
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 517.4
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 517.2
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 515.4
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 515.2
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 508.1
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 506.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 505.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 503.9
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 501.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 499.8
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 497.3
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 494.7
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 493.6
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 492.1
GTEX-1LG7Y-0011-R2b-SM-G8LMM 50-59 years, male 490.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 489.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 488.8
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 485.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 484.7
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 482.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 473.1
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 468.4
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 465.6
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 464.8
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 458.6
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 458.1
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 456.9
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 454.4
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 444.1
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 441.2
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 435.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 430.2
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 427.1
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 424.3
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 408.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 407.2
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 402.1
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 393.3
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 390.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 388.0
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 387.9
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 382.7
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 354.8
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 305.3
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MIDBRAIN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

709.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 709.0
FF:10158-103A5 76 years, female 709.0

MIDBRAIN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

123.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 122.2
Samples: 4

Max nTPM: 170.6
Min nTPM: 85.0
Sample A Female 170.6
Sample B Female 93.1
Sample C Male 140.0
Sample D Male 85.0
Midbrain
nTPM: 123.9
Samples: 4

Max nTPM: 141.9
Min nTPM: 108.0
Sample A Female 141.9
Sample B Female 118.4
Sample C Male 127.1
Sample D Male 108.0
Periaqueductal gray
nTPM: 98.3
Samples: 3

Max nTPM: 114.5
Min nTPM: 88.6
Sample B Female 91.7
Sample C Male 114.5
Sample D Male 88.6
Superior colliculi
nTPM: 123.6
Samples: 4

Max nTPM: 145.4
Min nTPM: 92.1
Sample A Female 142.8
Sample B Female 92.1
Sample C Male 145.4
Sample D Male 114.1

MIDBRAIN - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

522.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 522.0
Samples: 4

Max nTPM: 552.6
Min nTPM: 491.4
Sample A Male 552.6
Sample B Male 519.1
Sample C Female 491.4
Sample D Female 524.8

MIDBRAIN - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

4.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.0
79587726 Antisense, RP_071204_02_D06, Mouse strain C57BL/6J (56 days, male) 10.4
79749602 Antisense, RP_071204_02_D06, Mouse strain C57BL/6J (56 days, male) 6.4
994 Antisense, RP_Baylor_103044, Mouse strain C57BL/6J (56 days, male) 1.6
993 Sense, RPS_Baylor_37046, Mouse strain C57BL/6J (56 days, male) 0.0

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