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COL6A2
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  • COL6A2
TISSUE PRIMARY DATA OVARY Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Ovary
Tissue proteome
Ovary
Tissue methods
OVARY - Expression summary
Protein expression
Ovaryi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Follicle cells: Low
Ovarian stroma cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:679.0 nTPM
HPA:361.9 nTPM
GTEx:679.0 nTPM
FANTOM5:539.8 Scaled Tags Per Million
OVARY - SINGLE CELL RNA EXPRESSION
Explore single cell type data

OVARY - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA007029Antibody HPA030920Antibody HPA038799
Follicle cells -LowNot detected
Ovarian stroma cells HighMediumHigh







OVARY - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

361.9
overview
Female, age 64
Ovary sample 192
nTPM: 313.5
Cell types%
Stromal cells:
70

Smooth muscle cells:
15

Other cell types:
15

overview
Female, age 52
Ovary sample 193
nTPM: 265.5
Cell types%
Stromal cells:
95

Other cell types:
5

overview
Female, age 80
Ovary sample 308
nTPM: 84.1
Cell types%
Stromal cells:
70

Smooth muscle cells:
25

Other cell types:
5

N/A
Female, age 7
Ovary sample 3662
nTPM: 306.5
N/A
Female, age 16
Ovary sample 3663
nTPM: 217.5
N/A
Female, age 20
Ovary sample 3664
nTPM: 396.9
N/A
Female, age 32
Ovary sample 3665
nTPM: 949.1

OVARY - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

679.0
GTEx sample id Sample description nTPM
Ovary
Average nTPM: 679.0
Samples: 193

Max nTPM: 1516.5
Min nTPM: 259.3
Std nTPM: 177.7
Median nTPM: 672.3
GTEX-SE5C-0826-SM-HL9T7 40-49 years, female 1516.5
GTEX-WXYG-1426-SM-4ONCK 50-59 years, female 1143.1
GTEX-13O3O-2726-SM-5KM35 60-69 years, female 1123.9
GTEX-ZLWG-0926-SM-4WWC3 50-59 years, female 1088.3
GTEX-S341-0726-SM-4AD5R 40-49 years, female 1085.2
GTEX-X8HC-2726-SM-46MUA 50-59 years, female 1081.9
GTEX-1IDJE-1126-SM-A96SO 50-59 years, female 1041.8
GTEX-T5JW-0426-SM-4DM7M 20-29 years, female 1028.8
GTEX-TML8-0926-SM-4DXSJ 40-49 years, female 978.2
GTEX-1PBJI-2026-SM-DPRYF 20-29 years, female 973.5
GTEX-12WSJ-1226-SM-5LU91 40-49 years, female 968.9
GTEX-XUZC-1026-SM-4BOPY 30-39 years, female 950.4
GTEX-R55G-1526-SM-48FER 40-49 years, female 948.4
GTEX-15ER7-2326-SM-7KUN3 20-29 years, female 943.3
GTEX-15FZZ-0826-SM-6LLJO 30-39 years, female 941.4
GTEX-1RNTQ-1726-SM-F2I39 20-29 years, female 939.6
GTEX-QCQG-1426-SM-48U22 50-59 years, female 931.5
GTEX-1QEPI-2726-SM-DPRZ6 60-69 years, female 930.9
GTEX-UJHI-1226-SM-4IHLR 50-59 years, female 923.3
GTEX-ZZPU-2126-SM-5EGIU 50-59 years, female 909.8
GTEX-14PKU-1226-SM-686ZM 40-49 years, female 898.9
GTEX-1LGOU-1026-SM-DHXL4 20-29 years, female 896.9
GTEX-1R9PN-0626-SM-E6CR9 40-49 years, female 892.6
GTEX-Y114-1726-SM-4TT7U 50-59 years, female 888.8
GTEX-1F5PL-1626-SM-7MXTY 40-49 years, female 885.9
GTEX-1PIEJ-1626-SM-E6CP9 20-29 years, female 863.8
GTEX-OHPN-1626-SM-GNTBJ 60-69 years, female 857.6
GTEX-WEY5-0626-SM-4LMIA 40-49 years, female 848.7
GTEX-11P81-1526-SM-5P9GS 30-39 years, female 845.5
GTEX-1LVAM-1826-SM-DHXKR 50-59 years, female 845.5
GTEX-ZP4G-0626-SM-4WWF1 20-29 years, female 842.0
GTEX-15EOM-1526-SM-68723 20-29 years, female 839.1
GTEX-X4EO-2426-SM-4QASD 60-69 years, female 825.5
GTEX-1C475-0426-SM-7P8OU 40-49 years, female 821.8
GTEX-1IDJU-1126-SM-A9G2S 60-69 years, female 810.8
GTEX-14JG6-0626-SM-68716 30-39 years, female 809.6
GTEX-1GN1W-1426-SM-9JGHP 50-59 years, female 808.2
GTEX-1CAMS-2126-SM-7MXTF 40-49 years, female 805.2
GTEX-1IKOE-2326-SM-A8N99 30-39 years, female 805.0
GTEX-1B933-2126-SM-7MGXR 50-59 years, female 799.8
GTEX-1IE54-2126-SM-GA8ZX 40-49 years, female 798.6
GTEX-1ICG6-1526-SM-C1YQT 70-79 years, female 797.6
GTEX-1H1CY-1926-SM-9WG7X 60-69 years, female 795.8
GTEX-1J1OQ-1626-SM-CE6TB 40-49 years, female 795.8
GTEX-131XW-2726-SM-HL9U9 50-59 years, female 793.9
GTEX-QVJO-3126-SM-COH22 60-69 years, female 792.1
GTEX-ZVT3-2626-SM-5GU5L 60-69 years, female 782.9
GTEX-OHPL-2426-SM-48TDN 60-69 years, female 782.5
GTEX-PWCY-1326-SM-48TCU 20-29 years, female 778.6
GTEX-TMMY-1726-SM-4DXTD 40-49 years, female 778.4
GTEX-1KANC-1026-SM-D3LAA 50-59 years, female 776.2
GTEX-XYKS-1726-SM-4E3IO 60-69 years, female 772.5
GTEX-RWS6-1026-SM-47JXD 60-69 years, female 761.8
GTEX-14DAQ-2226-SM-5YYAD 60-69 years, female 761.4
GTEX-11I78-1926-SM-59878 50-59 years, female 760.2
GTEX-WI4N-2526-SM-4M9QQ 40-49 years, female 759.9
GTEX-RTLS-2326-SM-46MUH 60-69 years, female 758.8
GTEX-POMQ-1426-SM-3P61D 20-29 years, female 755.0
GTEX-1313W-2726-SM-5P9IX 50-59 years, female 753.2
GTEX-1F52S-2226-SM-7MXVE 60-69 years, female 747.4
GTEX-S4P3-0926-SM-4AD54 50-59 years, female 745.1
GTEX-SN8G-2426-SM-EVR31 50-59 years, female 742.5
GTEX-YFC4-2726-SM-5IFJW 40-49 years, female 739.5
GTEX-1I4MK-1526-SM-CE6T1 50-59 years, female 733.4
GTEX-13QIC-1526-SM-5IJFL 60-69 years, female 733.1
GTEX-14PJM-2426-SM-686ZC 50-59 years, female 730.5
GTEX-WWYW-2726-SM-4MVOP 50-59 years, female 729.0
GTEX-XMD3-2326-SM-4AT5H 50-59 years, female 728.2
GTEX-1EWIQ-2226-SM-7MGXJ 70-79 years, female 726.9
GTEX-131XG-1926-SM-5LZVG 50-59 years, female 719.4
GTEX-XUW1-0126-SM-4BOOQ 50-59 years, female 716.4
GTEX-1QP67-1526-SM-E76P4 40-49 years, female 715.9
GTEX-QDT8-2226-SM-EZ6LT 30-39 years, female 715.1
GTEX-PWN1-2426-SM-48TDD 40-49 years, female 713.3
GTEX-13OVI-0726-SM-5L3DD 60-69 years, female 710.5
GTEX-1399S-2126-SM-G8OM9 30-39 years, female 709.0
GTEX-13QBU-1526-SM-5LU3W 40-49 years, female 707.9
GTEX-1OJC4-2026-SM-E6CQW 50-59 years, female 705.9
GTEX-18A7A-2626-SM-7LG6L 50-59 years, female 704.8
GTEX-13VXT-1526-SM-5LU3J 20-29 years, female 704.4
GTEX-11XUK-1626-SM-5GU5O 40-49 years, female 702.7
GTEX-13SLX-2426-SM-664OM 50-59 years, female 700.4
GTEX-1LNCM-0926-SM-DHXK5 50-59 years, female 700.1
GTEX-13D11-1126-SM-5KLYS 50-59 years, female 697.6
GTEX-13W3W-1526-SM-5LU5I 60-69 years, female 697.6
GTEX-13OVJ-2426-SM-5KM3I 50-59 years, female 697.1
GTEX-1HBPH-2726-SM-A96TW 40-49 years, female 696.8
GTEX-W5X1-2026-SM-GPRX9 40-49 years, female 694.6
GTEX-145ME-1226-SM-5MR87 40-49 years, female 692.7
GTEX-1AMFI-1426-SM-731EL 50-59 years, female 689.7
GTEX-PLZ4-2826-SM-3P617 50-59 years, female 687.4
GTEX-X15G-1726-SM-4PQZN 50-59 years, female 686.3
GTEX-13X6H-1026-SM-5MR8F 50-59 years, female 675.9
GTEX-P78B-1926-SM-3P616 40-49 years, female 675.9
GTEX-11GSP-0226-SM-5A5KV 60-69 years, female 675.3
GTEX-ZYFG-1726-SM-5GZZB 60-69 years, female 674.6
GTEX-1HSGN-2426-SM-C1YRI 40-49 years, female 672.3
GTEX-R45C-2526-SM-GRR28 60-69 years, female 667.9
GTEX-T2IS-2026-SM-4DM6W 20-29 years, female 667.4
GTEX-1S5ZU-2326-SM-EAZ5B 20-29 years, female 666.6
GTEX-1NUQO-1726-SM-HK7A8 20-29 years, female 665.9
GTEX-17JCI-2326-SM-7IGPC 60-69 years, female 665.8
GTEX-12WSD-2726-SM-59HLR 60-69 years, female 662.7
GTEX-133LE-1226-SM-5IFGC 20-29 years, female 659.5
GTEX-145LS-2326-SM-5TDCY 60-69 years, female 658.6
GTEX-RU1J-0826-SM-46MUU 20-29 years, female 658.4
GTEX-15DYW-2626-SM-6LPK7 60-69 years, female 652.3
GTEX-1J8JJ-0826-SM-AHZ3F 60-69 years, female 651.0
GTEX-RU72-2226-SM-46MUE 50-59 years, female 650.7
GTEX-ZVT2-0326-SM-5E44G 50-59 years, female 649.5
GTEX-1JN76-1426-SM-AHZ4F 20-29 years, female 649.0
GTEX-PX3G-2426-SM-48TZZ 20-29 years, female 647.3
GTEX-11DXX-1426-SM-5GIDU 60-69 years, female 646.9
GTEX-1399U-1726-SM-5P9J4 50-59 years, female 642.1
GTEX-W5WG-0926-SM-4RTX9 50-59 years, female 641.4
GTEX-ZE7O-2226-SM-GNTC2 50-59 years, female 641.0
GTEX-14PN3-1526-SM-6ETZM 60-69 years, female 639.4
GTEX-1K9T9-2426-SM-DHXKT 50-59 years, female 638.3
GTEX-15UF6-2026-SM-6LPI3 70-79 years, female 626.8
GTEX-139D8-2426-SM-5KM3A 30-39 years, female 624.3
GTEX-18D9A-0826-SM-718C1 30-39 years, female 624.3
GTEX-131YS-2226-SM-5P9G8 60-69 years, female 621.9
GTEX-16MT8-2226-SM-6LPK2 60-69 years, female 618.4
GTEX-1LKK1-1626-SM-EVR4Y 50-59 years, female 618.4
GTEX-13PVR-1226-SM-5RQJ2 60-69 years, female 618.2
GTEX-14BIN-1426-SM-664NI 50-59 years, female 616.6
GTEX-1269C-1826-SM-5N9E1 60-69 years, female 611.0
GTEX-12ZZX-2026-SM-5LZV9 40-49 years, female 608.5
GTEX-ZPIC-1426-SM-4WWCP 40-49 years, female 605.8
GTEX-1A32A-2726-SM-73KVU 50-59 years, female 605.3
GTEX-14AS3-1326-SM-5RQJE 40-49 years, female 601.3
GTEX-TSE9-2226-SM-4DXUR 60-69 years, female 593.0
GTEX-11VI4-1026-SM-5EQM1 40-49 years, female 591.9
GTEX-11EM3-1726-SM-5N9D1 20-29 years, female 589.0
GTEX-T6MO-1126-SM-4DM5D 40-49 years, female 588.5
GTEX-U3ZN-1026-SM-4DXTC 30-39 years, female 587.3
GTEX-Q734-0726-SM-48TZP 40-49 years, female 581.8
GTEX-WYVS-1526-SM-4OND4 40-49 years, female 579.4
GTEX-1QPFJ-1726-SM-EXOJU 30-39 years, female 567.2
GTEX-ZC5H-2026-SM-5CVN2 40-49 years, female 563.1
GTEX-12WSK-1926-SM-5LZVK 40-49 years, female 561.7
GTEX-YJ8O-1026-SM-5CVM5 40-49 years, female 557.7
GTEX-16NPV-2326-SM-HL9UF 50-59 years, female 552.9
GTEX-1AMEY-0926-SM-72D6G 30-39 years, female 550.5
GTEX-145MI-2626-SM-5QGQ8 60-69 years, female 542.8
GTEX-13N11-0526-SM-5IJFI 50-59 years, female 539.6
GTEX-1MCYP-1426-SM-F2I3H 20-29 years, female 538.0
GTEX-16NGA-0426-SM-7LG6K 40-49 years, female 528.2
GTEX-1HCUA-1326-SM-9WPP6 50-59 years, female 527.5
GTEX-1MA7W-1426-SM-EV7A1 20-29 years, female 526.4
GTEX-15SDE-0926-SM-6LPIA 50-59 years, female 524.6
GTEX-11ZVC-1426-SM-5EGGA 50-59 years, female 522.5
GTEX-13PL7-2326-SM-5L3FY 60-69 years, female 520.8
GTEX-13U4I-2126-SM-5LU55 40-49 years, female 520.7
GTEX-14PKV-1226-SM-6871T 20-29 years, female 520.6
GTEX-P4QT-2426-SM-3NMCL 50-59 years, female 520.1
GTEX-15DDE-2326-SM-6AJA8 50-59 years, female 517.3
GTEX-183WM-1926-SM-72D5F 70-79 years, female 509.0
GTEX-146FH-2526-SM-5Q5BP 50-59 years, female 504.9
GTEX-ZYY3-2726-SM-5EGH4 60-69 years, female 500.8
GTEX-ZTPG-1926-SM-HAUZ1 20-29 years, female 500.6
GTEX-11ZTT-1826-SM-5CVLN 60-69 years, female 493.3
GTEX-Y3IK-2026-SM-4YCDG 50-59 years, female 490.6
GTEX-1R9JW-1226-SM-F2I1P 30-39 years, female 489.8
GTEX-1RDX4-0826-SM-E9TK7 50-59 years, female 487.4
GTEX-WYBS-2426-SM-4ONDI 60-69 years, female 484.3
GTEX-XV7Q-1426-SM-4BRWA 40-49 years, female 482.3
GTEX-1JN1M-2126-SM-D4P2X 60-69 years, female 475.1
GTEX-11ZTS-1926-SM-5CVLA 60-69 years, female 474.6
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 471.8
GTEX-1QP28-1326-SM-DPRXZ 50-59 years, female 467.8
GTEX-1I1CD-2026-SM-GA91R 60-69 years, female 463.6
GTEX-12WSG-1426-SM-5FQUK 50-59 years, female 463.5
GTEX-1F88E-2026-SM-7MXVP 60-69 years, female 458.7
GTEX-S7SF-1326-SM-4AD4P 20-29 years, female 453.4
GTEX-ZAJG-2726-SM-5S2MU 50-59 years, female 452.8
GTEX-1F6RS-2726-SM-7MKHA 60-69 years, female 444.5
GTEX-17F9Y-2226-SM-HL9UK 70-79 years, female 440.3
GTEX-1F48J-2326-SM-7MKG3 50-59 years, female 437.9
GTEX-13FTX-0926-SM-5IFF7 20-29 years, female 437.0
GTEX-11EMC-1726-SM-5H11P 60-69 years, female 434.9
GTEX-1GZHY-2426-SM-9JGGK 50-59 years, female 433.5
GTEX-P4PP-2426-SM-3P61L 30-39 years, female 433.4
GTEX-1A8FM-2226-SM-7PC1C 50-59 years, female 429.9
GTEX-1MCC2-1026-SM-EVR5I 30-39 years, female 427.0
GTEX-14BMU-1726-SM-5TDE8 20-29 years, female 412.3
GTEX-1H2FU-2326-SM-9WG7R 60-69 years, female 410.3
GTEX-13NZ8-2526-SM-H65ZM 60-69 years, female 394.7
GTEX-1LGRB-2326-SM-CNNPU 50-59 years, female 389.7
GTEX-15SHU-2726-SM-HAV2W 40-49 years, female 388.4
GTEX-S32W-1226-SM-4AD67 50-59 years, female 372.1
GTEX-OHPK-2426-SM-3MJGH 50-59 years, female 353.2
GTEX-132AR-1426-SM-5IFF1 50-59 years, female 259.3
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OVARY - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

539.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Ovary
Scaled Tags Per Million: 539.8
FF:10020-101D2 47,75,84 years, female 539.8

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