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RPL13A
HPA
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • RPL13A
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:917.4 nTPM
FANTOM5:118.1 Scaled Tags Per Million
Pig:6.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA038751
Glial cells Medium
Neuronal cells High



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

917.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 917.4
Samples: 300

Max nTPM: 1883.5
Min nTPM: 379.0
Std nTPM: 239.7
Median nTPM: 880.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 1883.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 1753.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 1655.4
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 1655.2
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 1633.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1609.2
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 1593.3
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 1585.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1568.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1527.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1426.1
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 1418.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 1399.1
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 1363.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 1351.9
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 1350.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 1346.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 1327.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 1320.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1319.7
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 1295.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 1285.5
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 1284.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 1280.3
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 1273.5
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 1255.2
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 1232.6
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 1225.7
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 1221.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1215.4
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 1213.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 1203.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1200.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 1183.7
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 1182.3
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 1179.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 1162.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 1153.5
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 1152.3
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 1143.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 1133.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 1131.8
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 1129.8
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 1124.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 1121.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 1118.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 1113.0
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 1112.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 1107.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 1104.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 1102.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 1095.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 1095.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 1095.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 1089.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 1088.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 1086.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 1084.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 1083.9
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 1080.6
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 1079.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 1074.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 1074.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 1071.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 1070.2
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 1068.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 1066.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 1065.7
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 1065.1
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 1064.4
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 1056.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 1055.0
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 1054.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 1054.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 1050.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 1049.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 1047.5
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 1043.6
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 1041.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 1038.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 1037.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 1034.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 1032.1
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 1031.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 1021.3
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 1021.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 1018.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 1016.1
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 1009.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 1009.1
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 1008.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 1006.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 1004.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 1004.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 1002.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 999.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 994.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 993.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 989.9
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 989.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 987.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 987.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 987.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 986.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 984.8
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 983.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 981.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 981.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 981.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 981.3
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 979.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 978.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 975.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 968.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 967.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 961.5
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 961.5
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 958.7
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 952.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 950.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 949.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 944.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 940.6
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 935.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 930.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 927.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 925.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 921.7
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 920.5
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 917.3
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 913.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 912.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 912.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 911.8
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 911.6
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 908.5
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 907.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 903.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 902.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 902.2
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 898.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 897.3
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 896.3
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 894.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 890.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 889.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 888.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 887.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 881.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 880.2
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 880.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 878.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 877.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 876.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 876.1
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 874.9
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 871.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 870.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 867.4
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 866.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 864.2
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 864.1
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 863.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 863.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 863.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 862.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 858.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 855.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 855.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 855.1
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 854.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 854.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 854.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 852.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 852.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 851.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 850.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 850.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 848.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 842.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 840.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 839.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 838.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 837.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 837.0
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 833.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 831.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 828.5
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 828.1
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 826.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 824.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 819.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 817.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 815.8
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 814.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 813.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 810.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 807.6
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 805.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 805.2
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 803.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 801.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 800.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 798.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 788.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 786.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 786.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 784.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 783.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 778.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 778.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 776.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 773.0
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 770.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 768.4
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 767.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 765.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 761.6
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 760.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 756.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 754.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 752.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 751.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 751.0
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 747.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 747.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 747.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 746.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 745.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 744.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 739.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 730.4
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 728.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 728.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 728.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 727.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 726.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 725.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 720.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 718.2
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 714.3
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 714.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 711.1
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 708.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 706.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 702.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 702.2
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 699.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 698.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 697.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 697.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 695.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 694.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 690.0
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 685.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 678.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 677.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 677.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 675.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 674.9
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 673.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 670.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 669.9
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 669.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 667.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 664.3
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 659.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 659.1
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 652.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 649.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 647.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 645.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 644.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 638.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 631.2
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 628.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 628.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 628.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 626.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 625.5
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 624.1
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 616.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 609.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 605.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 604.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 604.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 594.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 583.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 581.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 580.3
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 579.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 576.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 547.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 545.4
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 501.5
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 500.8
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 500.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 397.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 383.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 379.0
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

118.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 118.1
FF:10164-103B2 76 years, female 118.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

6.2
Pig sample Sample description nTPM
Caudate
nTPM: 6.2
Samples: 4

Max nTPM: 7.4
Min nTPM: 5.0
Sample A Female 6.1
Sample B Female 7.4
Sample C Male 6.2
Sample D Male 5.0

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