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RPL13A
HPA
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  • RPL13A
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
Tissue methods
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1985.6 nTPM
HPA:1380.3 nTPM
GTEx:1985.6 nTPM
FANTOM5:272.7 Scaled Tags Per Million
SMALL INTESTINE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA038751
Glandular cells Medium



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1380.3
overview
Male, age 65
Small intestine sample 232
nTPM: 1881
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 1258.9
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 1184.4
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 1196.8

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1985.6
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 1985.6
Samples: 207

Max nTPM: 3823.7
Min nTPM: 1050.1
Std nTPM: 557.1
Median nTPM: 1847.7
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 3823.7
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 3690.4
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 3587.8
GTEX-14PK6-1626-SM-6871I 70-79 years, female 3380.7
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 3342.4
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 3295.3
GTEX-1RQED-2826-SM-HLJQK 60-69 years, male 3285.1
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 3226.2
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 3192.3
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 3177.0
GTEX-183FY-1626-SM-793D8 20-29 years, male 3160.4
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 3101.6
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 3039.2
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 3015.9
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 2978.8
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 2907.4
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 2849.7
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 2846.1
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 2842.6
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 2791.4
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 2783.7
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 2708.1
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 2690.8
GTEX-13O61-1326-SM-5KM31 60-69 years, male 2685.6
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 2677.9
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 2656.8
GTEX-1HKZK-2226-SM-GA91V 40-49 years, male 2655.7
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 2636.4
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 2620.7
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 2612.5
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 2610.4
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 2601.7
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 2583.1
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 2542.8
GTEX-W5X1-1926-SM-GOQYX 40-49 years, female 2524.2
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 2524.0
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 2516.4
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 2509.1
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 2493.4
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 2493.2
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 2465.3
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 2449.3
GTEX-13X6H-1826-SM-5O9D1 50-59 years, female 2445.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 2439.2
GTEX-1C475-1426-SM-793CH 40-49 years, female 2426.2
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 2422.4
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 2419.4
GTEX-14PKU-1626-SM-6871C 40-49 years, female 2392.5
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 2341.8
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 2311.7
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 2304.9
GTEX-1M5QR-2226-SM-HLJRV 40-49 years, male 2301.6
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 2301.4
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 2293.3
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 2287.6
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 2286.8
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 2278.4
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 2261.4
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 2233.5
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 2227.9
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 2221.5
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 2218.8
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 2213.2
GTEX-1MCYP-1626-SM-HLJQ5 20-29 years, female 2202.4
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 2198.3
GTEX-ZV7C-1426-SM-GNTB8 50-59 years, male 2184.2
GTEX-1HSGN-2126-SM-GA8ZB 40-49 years, female 2182.6
GTEX-WHPG-1826-SM-GNTAH 50-59 years, male 2173.4
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 2154.6
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 2138.5
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 2135.1
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 2113.9
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 2090.9
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 2081.1
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 2077.1
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 2052.5
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 2045.9
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 2045.3
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 2028.4
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 2025.6
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 2015.3
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 2008.7
GTEX-U8XE-2226-SM-HAUZQ 30-39 years, male 2001.9
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 1994.3
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 1983.8
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 1980.6
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 1972.2
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 1967.4
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 1950.5
GTEX-XPT6-1026-SM-GOQYN 20-29 years, male 1919.3
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 1913.1
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 1911.3
GTEX-117YX-0326-SM-5GICL 50-59 years, male 1909.5
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 1895.9
GTEX-1PFEY-1326-SM-HK791 30-39 years, male 1895.5
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 1895.3
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 1894.0
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 1890.8
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 1885.5
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 1879.9
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 1867.6
GTEX-ZPU1-1826-SM-GNTB3 40-49 years, male 1867.1
GTEX-1HCUA-1726-SM-GA8Z2 50-59 years, female 1866.3
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 1847.7
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 1836.4
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 1835.1
GTEX-13113-1226-SM-5EGHT 60-69 years, female 1832.6
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 1822.2
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 1817.0
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 1815.6
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 1790.3
GTEX-1192X-2526-SM-59868 50-59 years, male 1788.6
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 1784.6
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 1784.2
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 1778.4
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 1773.3
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 1772.3
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 1767.2
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 1758.5
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 1755.7
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1747.1
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 1739.5
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 1727.1
GTEX-144GM-1026-SM-5O9AZ 20-29 years, male 1725.0
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 1722.4
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 1720.7
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 1719.4
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 1713.2
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 1709.1
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 1708.3
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 1707.6
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 1700.4
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 1698.1
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 1695.2
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 1694.8
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 1691.4
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 1691.0
GTEX-ZT9X-1026-SM-HLJS2 40-49 years, male 1688.8
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 1677.3
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 1672.7
GTEX-1NHNU-2526-SM-HK79M 50-59 years, male 1667.2
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1659.5
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 1649.8
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 1649.6
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 1644.2
GTEX-YJ8A-2126-SM-GQ1C7 20-29 years, male 1636.0
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 1613.0
GTEX-1HBPN-1926-SM-GA91H 50-59 years, male 1611.7
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 1608.9
GTEX-X4LF-1326-SM-HLJSD 50-59 years, male 1608.0
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 1606.3
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 1606.2
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 1604.7
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 1602.8
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 1597.4
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 1591.8
GTEX-1S831-1526-SM-HLJQS 20-29 years, male 1586.9
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 1584.7
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 1584.2
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 1570.1
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 1538.2
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 1538.0
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 1519.1
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 1509.1
GTEX-13111-1426-SM-5DUW3 50-59 years, male 1508.3
GTEX-1MA7W-0726-SM-HLJQU 20-29 years, female 1508.0
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 1506.9
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 1492.5
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 1487.5
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 1480.9
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 1465.6
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 1459.9
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 1453.5
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 1424.6
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1423.1
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 1419.4
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 1417.7
GTEX-14PN3-2026-SM-68729 60-69 years, female 1416.1
GTEX-X3Y1-1526-SM-H6Q6X 40-49 years, male 1415.1
GTEX-111YS-1426-SM-5GID8 60-69 years, male 1410.8
GTEX-YB5K-1126-SM-H6Q6O 40-49 years, female 1409.3
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 1404.9
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 1400.3
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 1399.9
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 1380.0
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 1373.8
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 1370.4
GTEX-1122O-1326-SM-5H11F 60-69 years, female 1364.1
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 1360.8
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 1350.7
GTEX-178AV-1226-SM-GOR11 40-49 years, male 1330.6
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 1327.5
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 1327.2
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 1320.2
GTEX-YFCO-1326-SM-664NV 40-49 years, male 1289.8
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 1281.5
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 1279.2
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 1268.7
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 1262.4
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1253.0
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 1252.7
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 1247.9
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 1240.2
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 1214.1
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 1200.8
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 1169.6
GTEX-ZTSS-0926-SM-59865 40-49 years, male 1050.1
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

272.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 272.7
FF:10024-101D6 15,40,85 years, mixed 272.7

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