MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.6 nTPM
HPA Brain:82.7 nTPM
GTEx:8.6 nTPM
FANTOM5:36.5 Scaled Tags Per Million
Pig:38.0 nTPM
Mouse:14.0 nTPM
Allen mouse:0.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 82.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 78.4
2586 Male, age 75, left hemisphere 102.6
2019 Male, age 18, unknown 88.9
2411 Female, age 72, unknown 84.0
1830 Male, age 51, unknown 77.0
2666 Male, age 74, left hemisphere 76.9
1833 Male, age 53, unknown 76.8
1870 Female, age 42, unknown 74.5
2828 Female, age 72, unknown 73.7
1827 Male, age 72, unknown 70.0
2219 Male, age 76, both hemispheres 59.7
Dorsal raphe nucleus
nTPM: 63.8
2750 Male, age 76, both hemispheres 73.4
2047 Male, age 72, unknown 63.1
1828 Male, age 53, unknown 61.9
2016 Female, age 72, unknown 61.6
2298 Female, age 72, unknown 59.1
Inferior colliculus
nTPM: 72.8
1848 Female, age 42, unknown 74.2
1890 Male, age 53, unknown 73.9
2849 Male, age 72, unknown 71.9
2097 Female, age 72, unknown 71.4
Median raphe nucleus
nTPM: 54.5
2220 Male, age 76, midline 54.5
Periaquaductal grey, anterior
nTPM: 79.6
2502 Female, age 75, unknown 98.7
1947 Male, age 18, unknown 70.1
1795 Male, age 51, unknown 70.0
Periaquaductal grey, dorsal
nTPM: 58.6
2464 Female, age 72, unknown 69.6
1840 Male, age 53, unknown 61.8
1831 Male, age 72, unknown 58.5
2850 Male, age 76, both hemispheres 44.5
Periaquaductal grey, lateral
nTPM: 57.5
2272 Male, age 74, both hemispheres 63.2
2053 Male, age 18, unknown 60.8
2140 Male, age 76, both hemispheres 48.5
Pretectal area
nTPM: 71.5
2407 Male, age 75, both hemispheres 85.3
2007 Male, age 72, unknown 85.0
1817 Female, age 42, unknown 77.6
1815 Male, age 53, unknown 74.6
1816 Male, age 51, unknown 73.4
2667 Female, age 75, unknown 71.4
1944 Female, age 72, unknown 69.9
2825 Male, age 18, unknown 65.6
2316 Male, age 76, right hemisphere 63.4
2273 Male, age 74, both hemispheres 63.0
2224 Female, age 72, unknown 57.5
Red nucleus
nTPM: 82.7
2584 Male, age 75, left hemisphere 107.1
2785 Male, age 18, unknown 96.5
2588 Male, age 74, left hemisphere 90.1
2769 Male, age 72, unknown 87.3
2227 Male, age 72, unknown 85.2
1865 Male, age 51, unknown 79.0
1904 Male, age 53, unknown 78.0
2823 Male, age 76, right hemisphere 76.2
2503 Female, age 72, unknown 75.1
1821 Female, age 72, unknown 74.4
2725 Female, age 75, unknown 74.3
1954 Female, age 42, unknown 69.0
Substantia nigra
nTPM: 63.3
2583 Male, age 75, right hemisphere 85.5
1889 Female, age 72, unknown 71.4
2590 Female, age 75, unknown 66.3
1941 Male, age 53, unknown 65.9
1851 Male, age 51, unknown 65.6
1916 Female, age 42, unknown 59.7
2665 Male, age 74, both hemispheres 58.5
2409 Female, age 72, unknown 56.2
2699 Male, age 18, unknown 52.7
2241 Male, age 72, unknown 50.9
Superior colliculus
nTPM: 75.4
2664 Male, age 75, both hemispheres 93.4
1839 Male, age 51, unknown 78.9
1995 Male, age 72, unknown 78.1
1913 Female, age 42, unknown 76.4
2261 Male, age 18, unknown 75.3
1796 Male, age 53, unknown 75.1
1895 Male, age 76, right hemisphere 74.2
2587 Male, age 74, left hemisphere 73.8
2087 Female, age 72, unknown 66.6
2668 Female, age 75, unknown 61.9
Ventral tegmental area
nTPM: 67.0
2223 Female, age 72, unknown 85.7
2410 Female, age 72, unknown 73.8
1942 Male, age 51, unknown 68.2
2021 Male, age 53, unknown 60.4
1915 Female, age 42, unknown 57.8
2218 Male, age 76, both hemispheres 55.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 8.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.6
Samples: 183

Max nTPM: 46.8
Min nTPM: 0.8
Std nTPM: 4.6
Median nTPM: 7.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 46.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 23.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 21.0
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 20.9
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 18.2
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 17.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 17.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 17.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 16.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 16.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 16.0
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 36.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 36.5
FF:10158-103A5 76 years, female 36.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 38.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 29.2
Samples: 4

Max nTPM: 36.2
Min nTPM: 20.5
Sample A Female 33.7
Sample B Female 20.5
Sample C Male 36.2
Sample D Male 26.4
Midbrain
nTPM: 38.0
Samples: 4

Max nTPM: 59.2
Min nTPM: 21.3
Sample A Female 30.9
Sample B Female 21.3
Sample C Male 59.2
Sample D Male 40.7
Periaqueductal gray
nTPM: 25.4
Samples: 3

Max nTPM: 30.3
Min nTPM: 22.4
Sample B Female 22.4
Sample C Male 30.3
Sample D Male 23.6
Superior colliculi
nTPM: 37.5
Samples: 4

Max nTPM: 52.6
Min nTPM: 16.9
Sample A Female 38.6
Sample B Female 16.9
Sample C Male 52.6
Sample D Male 41.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 14.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.0
Samples: 4

Max nTPM: 15.3
Min nTPM: 11.6
Sample A Male 11.6
Sample B Male 13.8
Sample C Female 15.3
Sample D Female 15.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
69237065 Antisense, RP_050331_01_G05, Mouse strain C57BL/6J (56 days, male) 0.8

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo