MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:36.3 nTPM
HPA Brain:38.7 nTPM
GTEx:36.3 nTPM
FANTOM5:41.2 Scaled Tags Per Million
Pig:38.1 nTPM
Mouse:58.2 nTPM
Allen mouse:3.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 38.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.1
2019 Male, age 18, unknown 42.4
2411 Female, age 72, unknown 36.6
2586 Male, age 75, left hemisphere 34.9
2666 Male, age 74, left hemisphere 33.6
1827 Male, age 72, unknown 32.8
1870 Female, age 42, unknown 29.9
2219 Male, age 76, both hemispheres 29.0
1833 Male, age 53, unknown 28.7
1830 Male, age 51, unknown 26.9
2828 Female, age 72, unknown 26.4
Dorsal raphe nucleus
nTPM: 32.4
2298 Female, age 72, unknown 40.3
1828 Male, age 53, unknown 35.8
2047 Male, age 72, unknown 31.0
2750 Male, age 76, both hemispheres 28.1
2016 Female, age 72, unknown 26.9
Inferior colliculus
nTPM: 33.5
2097 Female, age 72, unknown 40.1
1890 Male, age 53, unknown 37.2
1848 Female, age 42, unknown 29.9
2849 Male, age 72, unknown 26.9
Median raphe nucleus
nTPM: 31.4
2220 Male, age 76, midline 31.4
Periaquaductal grey, anterior
nTPM: 28.4
1795 Male, age 51, unknown 29.3
2502 Female, age 75, unknown 28.0
1947 Male, age 18, unknown 27.9
Periaquaductal grey, dorsal
nTPM: 29.9
1831 Male, age 72, unknown 33.5
1840 Male, age 53, unknown 29.8
2850 Male, age 76, both hemispheres 28.3
2464 Female, age 72, unknown 28.0
Periaquaductal grey, lateral
nTPM: 28.3
2053 Male, age 18, unknown 30.0
2272 Male, age 74, both hemispheres 29.7
2140 Male, age 76, both hemispheres 25.0
Pretectal area
nTPM: 38.7
1816 Male, age 51, unknown 53.8
1817 Female, age 42, unknown 47.8
1944 Female, age 72, unknown 47.6
2007 Male, age 72, unknown 46.8
1815 Male, age 53, unknown 41.9
2667 Female, age 75, unknown 34.7
2224 Female, age 72, unknown 32.7
2407 Male, age 75, both hemispheres 31.5
2316 Male, age 76, right hemisphere 30.8
2273 Male, age 74, both hemispheres 29.9
2825 Male, age 18, unknown 27.9
Red nucleus
nTPM: 31.7
1821 Female, age 72, unknown 39.4
2785 Male, age 18, unknown 37.5
2725 Female, age 75, unknown 32.7
2503 Female, age 72, unknown 32.3
1904 Male, age 53, unknown 31.6
2769 Male, age 72, unknown 30.9
1954 Female, age 42, unknown 30.5
1865 Male, age 51, unknown 30.4
2588 Male, age 74, left hemisphere 29.9
2823 Male, age 76, right hemisphere 29.9
2227 Male, age 72, unknown 29.8
2584 Male, age 75, left hemisphere 25.9
Substantia nigra
nTPM: 33.5
1889 Female, age 72, unknown 44.3
1916 Female, age 42, unknown 38.9
2241 Male, age 72, unknown 35.5
1851 Male, age 51, unknown 34.9
2665 Male, age 74, both hemispheres 32.0
2590 Female, age 75, unknown 31.7
2583 Male, age 75, right hemisphere 31.5
2409 Female, age 72, unknown 30.5
1941 Male, age 53, unknown 30.3
2699 Male, age 18, unknown 25.6
Superior colliculus
nTPM: 32.7
2087 Female, age 72, unknown 41.8
2668 Female, age 75, unknown 36.1
2261 Male, age 18, unknown 34.2
1895 Male, age 76, right hemisphere 33.4
1796 Male, age 53, unknown 32.2
2587 Male, age 74, left hemisphere 31.8
1913 Female, age 42, unknown 31.4
1995 Male, age 72, unknown 29.1
1839 Male, age 51, unknown 28.4
2664 Male, age 75, both hemispheres 28.1
Ventral tegmental area
nTPM: 31.7
2410 Female, age 72, unknown 38.4
1915 Female, age 42, unknown 33.9
2218 Male, age 76, both hemispheres 31.8
2223 Female, age 72, unknown 30.1
1942 Male, age 51, unknown 28.5
2021 Male, age 53, unknown 27.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 36.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 36.3
Samples: 183

Max nTPM: 60.1
Min nTPM: 21.0
Std nTPM: 7.9
Median nTPM: 35.9
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 60.1
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 58.1
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 56.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 55.6
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 54.1
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 53.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 53.6
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 53.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 52.3
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 52.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 51.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 41.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 41.2
FF:10158-103A5 76 years, female 41.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 38.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 33.1
Samples: 4

Max nTPM: 37.9
Min nTPM: 28.9
Sample A Female 28.9
Sample B Female 31.9
Sample C Male 33.6
Sample D Male 37.9
Midbrain
nTPM: 37.6
Samples: 4

Max nTPM: 42.2
Min nTPM: 31.6
Sample A Female 31.6
Sample B Female 36.1
Sample C Male 40.6
Sample D Male 42.2
Periaqueductal gray
nTPM: 34.7
Samples: 3

Max nTPM: 35.9
Min nTPM: 32.3
Sample B Female 35.8
Sample C Male 32.3
Sample D Male 35.9
Superior colliculi
nTPM: 38.1
Samples: 4

Max nTPM: 43.9
Min nTPM: 33.6
Sample A Female 36.0
Sample B Female 33.6
Sample C Male 43.9
Sample D Male 38.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 58.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 58.3
Samples: 4

Max nTPM: 65.1
Min nTPM: 55.4
Sample A Male 57.1
Sample B Male 55.4
Sample C Female 55.5
Sample D Female 65.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.3
79393535 Antisense, RP_071018_02_B02, Mouse strain C57BL/6J (56 days, male) 3.3

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