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  • PFDN2
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:185.3 nTPM
HPA Brain:55.7 nTPM
GTEx:185.3 nTPM
FANTOM5:82.4 Scaled Tags Per Million
Pig:18.2 nTPM
Mouse:80.6 nTPM
Allen mouse:5.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

55.7
Sample id Sample description nTPM
Amygdala
nTPM: 55.7
2814 Male, age 76, right hemisphere 67.6
2695 Female, age 67, right hemisphere 66.6
1987 Female, age 91, left hemisphere 53.1
2514 Male, age 75, right hemisphere 46.5
2517 Female, age 94, left hemisphere 44.5
Basal amygdala
nTPM: 53.8
1955 Male, age 76, both hemispheres 61.1
2827 Female, age 67, right hemisphere 60.4
2110 Male, age 80, left hemisphere 57.2
2685 Female, age 94, left hemisphere 50.4
2243 Female, age 91, right hemisphere 47.0
2609 Male, age 75, right hemisphere 46.4
Central amygdala
nTPM: 53.9
2826 Female, age 94, left hemisphere 67.7
1905 Male, age 76, both hemispheres 63.2
2239 Male, age 80, left hemisphere 53.7
2701 Female, age 91, right hemisphere 45.6
2515 Male, age 75, right hemisphere 39.5
Corticomedial amygdala
nTPM: 46.5
2429 Female, age 94, left hemisphere 51.0
2829 Male, age 80, left hemisphere 50.3
2240 Male, age 76, both hemispheres 48.7
2535 Female, age 67, right hemisphere 46.0
2242 Female, age 91, right hemisphere 43.4
2428 Male, age 75, right hemisphere 39.3
Lateral amygdala
nTPM: 53.3
2830 Female, age 67, right hemisphere 67.8
1883 Male, age 76, both hemispheres 65.9
2534 Female, age 94, left hemisphere 58.4
2516 Male, age 75, right hemisphere 48.3
2256 Male, age 80, left hemisphere 40.1
2255 Female, age 91, right hemisphere 39.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

185.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 185.3
Samples: 181

Max nTPM: 444.6
Min nTPM: 106.4
Std nTPM: 48.9
Median nTPM: 181.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 444.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 360.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 359.6
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 348.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 298.4
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 294.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 290.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 287.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 277.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 264.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 259.5
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 258.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 255.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 250.8
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 248.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 244.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 241.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 239.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 238.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 237.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 236.5
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 234.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 232.6
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 231.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 230.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 229.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 229.4
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 228.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 225.9
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 222.3
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 218.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 218.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 217.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 216.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 213.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 212.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 212.2
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 209.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 209.9
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 209.9
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 209.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 205.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 205.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 205.7
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 204.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 202.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 202.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 201.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 201.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 200.5
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 200.4
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 200.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 199.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 199.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 199.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 198.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 198.5
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 198.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 198.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 197.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 197.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 196.8
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 195.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 193.6
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 193.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 192.4
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 190.8
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 190.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 190.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 190.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 189.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 188.6
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 186.9
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 186.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 186.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 186.2
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 185.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 185.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 184.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 184.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 184.3
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 184.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 184.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 184.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 183.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 183.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 183.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 182.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 182.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 182.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 181.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 181.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 181.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 180.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 180.3
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 180.0
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 179.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 178.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 177.4
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 175.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 173.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 173.7
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 173.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 173.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 173.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 172.1
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 171.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 170.8
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 170.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 169.7
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 169.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 167.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 167.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 166.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 165.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 165.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 164.8
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 163.4
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 162.9
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 162.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 161.9
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 161.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 161.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 161.3
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 160.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 158.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 158.4
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 157.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 157.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 156.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 155.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 154.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 154.4
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 154.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 154.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 154.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 153.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 152.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 152.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 152.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 151.3
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 149.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 149.4
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 148.2
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 147.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 147.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 147.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 146.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 144.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 142.7
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 142.4
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 141.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 141.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 141.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 139.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 139.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 139.2
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 138.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 136.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 135.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 135.2
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 132.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 131.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 131.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 131.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 130.9
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 129.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 129.3
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 127.5
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 125.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 122.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 120.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 119.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 118.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 114.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 114.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 113.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 111.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 109.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 108.7
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 106.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

82.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 82.4
FF:10151-102I7 76 years, female 82.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

18.2
Pig sample Sample description nTPM
Amygdala
nTPM: 18.2
Samples: 4

Max nTPM: 22.1
Min nTPM: 14.2
Sample A Female 22.1
Sample B Female 19.3
Sample C Male 17.0
Sample D Male 14.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

80.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 80.6
Samples: 4

Max nTPM: 88.5
Min nTPM: 74.4
Sample A Male 74.4
Sample B Male 80.9
Sample C Female 88.5
Sample D Female 78.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

5.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 5.9
68666601 Antisense, RP_050126_02_E12, Mouse strain C57BL/6J (56 days, male) 5.9

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