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  • TISSUE

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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:141.1 nTPM
FANTOM5:101.2 Scaled Tags Per Million
Pig:182.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA051294
Glial cells Not detected
Neuronal cells Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

141.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 141.1
Samples: 300

Max nTPM: 400.9
Min nTPM: 58.4
Std nTPM: 41.8
Median nTPM: 131.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 400.9
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 306.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 298.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 276.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 257.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 252.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 248.6
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 246.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 232.9
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 232.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 228.1
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 224.4
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 214.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 213.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 213.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 213.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 210.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 209.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 206.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 203.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 201.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 200.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 199.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 198.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 197.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 197.3
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 196.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 196.4
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 195.9
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 195.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 193.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 193.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 192.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 192.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 191.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 191.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 191.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 190.6
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 189.8
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 189.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 184.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 183.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 183.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 183.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 181.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 181.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 179.3
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 178.1
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 175.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 175.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 174.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 174.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 173.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 172.2
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 171.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 171.4
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 170.9
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 170.3
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 169.9
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 169.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 168.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 167.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 166.0
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 165.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 165.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 165.4
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 164.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 164.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 164.3
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 163.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 162.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 162.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 162.0
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 160.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 159.9
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 158.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 158.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 158.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 158.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 157.8
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 157.5
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 157.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 156.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 156.5
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 155.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 155.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 154.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 154.7
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 154.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 154.5
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 154.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 153.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 153.5
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 153.5
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 153.1
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 152.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 151.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 151.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 151.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 150.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 149.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 149.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 148.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 148.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 148.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 148.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 147.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 147.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 147.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 147.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 146.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 146.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 146.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 144.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 144.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 144.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 144.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 143.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 143.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 143.0
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 142.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 142.1
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 141.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 141.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 140.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 140.7
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 140.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 140.5
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 140.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 139.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 139.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 138.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 138.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 137.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 136.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 136.7
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 136.4
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 136.3
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 135.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 135.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 135.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 134.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 134.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 134.0
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 133.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 133.2
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 132.9
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 132.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 132.2
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 131.3
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 131.0
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 131.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 130.6
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 130.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 130.4
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 130.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 130.3
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 129.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 129.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 128.8
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 128.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 128.3
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 128.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 127.9
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 127.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 127.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 127.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 127.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 127.4
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 127.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 127.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 127.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 127.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 126.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 126.6
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 125.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 125.7
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 125.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 124.3
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 124.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 124.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 123.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 123.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 123.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 123.1
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 123.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 123.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 122.8
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 122.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 122.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 121.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 121.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 121.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 120.9
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 120.7
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 120.5
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 120.4
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 119.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 119.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 119.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 119.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 119.1
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 118.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 118.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 118.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 118.2
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 117.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 117.9
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 117.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 117.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 117.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 117.6
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 117.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 117.2
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 116.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 116.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 116.3
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 116.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 116.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 116.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 115.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 115.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 114.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 114.7
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 114.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 114.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 113.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 113.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 113.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 112.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 112.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 112.1
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 112.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 111.8
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 111.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 110.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 110.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 109.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 109.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 109.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 108.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 108.6
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 108.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 108.2
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 107.4
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 107.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 107.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 107.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 107.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 106.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 106.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 106.2
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 105.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 105.9
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 105.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 105.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 105.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 104.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 104.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 104.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 103.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 103.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 103.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 102.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 102.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 101.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 101.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 100.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 100.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 100.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 99.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 98.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 98.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 98.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 97.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 97.1
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 94.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 93.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 92.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 92.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 90.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 90.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 90.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 89.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 88.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 87.1
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 86.6
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 85.5
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 84.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 84.4
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 84.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 81.8
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 78.8
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 78.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 78.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 78.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 77.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 75.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 69.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 58.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

101.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 101.2
FF:10164-103B2 76 years, female 101.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

182.5
Pig sample Sample description nTPM
Caudate
nTPM: 182.5
Samples: 4

Max nTPM: 214.0
Min nTPM: 161.2
Sample A Female 161.2
Sample B Female 192.8
Sample C Male 214.0
Sample D Male 162.0

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