MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:130.9 nTPM
HPA Brain:126.2 nTPM
GTEx:130.9 nTPM
FANTOM5:30.5 Scaled Tags Per Million
Pig:151.6 nTPM
Mouse:90.9 nTPM
Allen mouse:9.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 126.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 93.9
2666 Male, age 74, left hemisphere 126.4
2219 Male, age 76, both hemispheres 104.8
1827 Male, age 72, unknown 95.3
1870 Female, age 42, unknown 93.7
2411 Female, age 72, unknown 89.8
2586 Male, age 75, left hemisphere 87.2
1833 Male, age 53, unknown 86.3
1830 Male, age 51, unknown 86.1
2828 Female, age 72, unknown 85.3
2019 Male, age 18, unknown 84.1
Dorsal raphe nucleus
nTPM: 92.4
2750 Male, age 76, both hemispheres 102.4
2047 Male, age 72, unknown 100.0
1828 Male, age 53, unknown 94.3
2298 Female, age 72, unknown 88.8
2016 Female, age 72, unknown 76.5
Inferior colliculus
nTPM: 77.8
1890 Male, age 53, unknown 80.2
2849 Male, age 72, unknown 79.4
2097 Female, age 72, unknown 79.2
1848 Female, age 42, unknown 72.4
Median raphe nucleus
nTPM: 125.0
2220 Male, age 76, midline 125.0
Periaquaductal grey, anterior
nTPM: 89.3
1795 Male, age 51, unknown 95.1
1947 Male, age 18, unknown 86.6
2502 Female, age 75, unknown 86.2
Periaquaductal grey, dorsal
nTPM: 81.8
2850 Male, age 76, both hemispheres 89.5
1840 Male, age 53, unknown 81.9
1831 Male, age 72, unknown 81.8
2464 Female, age 72, unknown 73.9
Periaquaductal grey, lateral
nTPM: 74.7
2272 Male, age 74, both hemispheres 78.1
2140 Male, age 76, both hemispheres 73.0
2053 Male, age 18, unknown 72.9
Pretectal area
nTPM: 91.0
1816 Male, age 51, unknown 110.0
1944 Female, age 72, unknown 108.5
1815 Male, age 53, unknown 107.4
1817 Female, age 42, unknown 104.0
2007 Male, age 72, unknown 100.1
2825 Male, age 18, unknown 89.2
2224 Female, age 72, unknown 87.5
2407 Male, age 75, both hemispheres 85.4
2667 Female, age 75, unknown 80.1
2273 Male, age 74, both hemispheres 66.2
2316 Male, age 76, right hemisphere 62.1
Red nucleus
nTPM: 87.9
2725 Female, age 75, unknown 115.1
2584 Male, age 75, left hemisphere 108.2
2588 Male, age 74, left hemisphere 104.0
2785 Male, age 18, unknown 86.7
1821 Female, age 72, unknown 85.7
2503 Female, age 72, unknown 85.3
1904 Male, age 53, unknown 81.4
2823 Male, age 76, right hemisphere 80.3
1865 Male, age 51, unknown 79.1
1954 Female, age 42, unknown 78.5
2769 Male, age 72, unknown 75.8
2227 Male, age 72, unknown 74.9
Substantia nigra
nTPM: 126.2
1916 Female, age 42, unknown 188.4
2241 Male, age 72, unknown 145.8
2699 Male, age 18, unknown 145.7
1851 Male, age 51, unknown 145.4
2665 Male, age 74, both hemispheres 122.2
1941 Male, age 53, unknown 119.6
1889 Female, age 72, unknown 105.8
2583 Male, age 75, right hemisphere 102.1
2409 Female, age 72, unknown 97.7
2590 Female, age 75, unknown 89.3
Superior colliculus
nTPM: 82.6
2087 Female, age 72, unknown 98.8
2668 Female, age 75, unknown 98.5
1796 Male, age 53, unknown 92.1
2587 Male, age 74, left hemisphere 91.8
1913 Female, age 42, unknown 81.4
2261 Male, age 18, unknown 81.2
1839 Male, age 51, unknown 72.4
1995 Male, age 72, unknown 72.3
2664 Male, age 75, both hemispheres 70.8
1895 Male, age 76, right hemisphere 66.1
Ventral tegmental area
nTPM: 117.6
2218 Male, age 76, both hemispheres 140.3
1915 Female, age 42, unknown 129.4
2223 Female, age 72, unknown 126.0
2410 Female, age 72, unknown 112.4
1942 Male, age 51, unknown 101.1
2021 Male, age 53, unknown 96.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 130.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 130.9
Samples: 183

Max nTPM: 273.9
Min nTPM: 63.7
Std nTPM: 37.7
Median nTPM: 124.2
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 273.9
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 261.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 249.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 244.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 230.2
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 207.1
GTEX-1N2EE-0011-R2a-SM-F649F 60-69 years, male 205.7
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 199.5
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 198.9
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 197.7
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 194.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 30.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 30.5
FF:10158-103A5 76 years, female 30.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 151.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 151.6
Samples: 4

Max nTPM: 168.6
Min nTPM: 130.1
Sample A Female 168.6
Sample B Female 144.2
Sample C Male 163.4
Sample D Male 130.1
Midbrain
nTPM: 145.2
Samples: 4

Max nTPM: 205.7
Min nTPM: 117.7
Sample A Female 205.7
Sample B Female 134.9
Sample C Male 122.4
Sample D Male 117.7
Periaqueductal gray
nTPM: 124.5
Samples: 3

Max nTPM: 141.6
Min nTPM: 111.4
Sample B Female 120.4
Sample C Male 141.6
Sample D Male 111.4
Superior colliculi
nTPM: 129.3
Samples: 4

Max nTPM: 150.1
Min nTPM: 114.5
Sample A Female 150.1
Sample B Female 114.5
Sample C Male 121.6
Sample D Male 130.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 90.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 90.9
Samples: 4

Max nTPM: 93.0
Min nTPM: 88.6
Sample A Male 93.0
Sample B Male 90.3
Sample C Female 91.6
Sample D Female 88.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 9.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.4
275873 Antisense, RP_040604_02_F06, Mouse strain C57BL/6J (56 days, male) 14.8
199223 Antisense, RP_040604_02_F06, Mouse strain C57BL/6J (56 days, male) 12.9
70919358 Antisense, RP_050713_01_B08, Mouse strain C57BL/6J (56 days, male) 4.0

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