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  • ILF2
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:45.8 nTPM
HPA Brain:53.7 nTPM
GTEx:45.8 nTPM
FANTOM5:54.4 Scaled Tags Per Million
Pig:91.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

53.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 46.8
1981 Female, age 72, midline 57.7
2048 Male, age 55, midline 46.8
2565 Male, age 75, midline 45.2
2194 Female, age 79, both hemispheres 42.3
2816 Male, age 47, midline 42.1
Cervical spinal cord, dorsal horn
nTPM: 53.7
2069 Male, age 47, both hemispheres 61.8
2173 Female, age 72, unknown 60.5
2296 Male, age 66, both hemispheres 57.4
2297 Male, age 75, both hemispheres 50.9
2721 Male, age 90, both hemispheres 46.0
1877 Male, age 55, unknown 45.8
Cervical spinal cord, ventral horn
nTPM: 49.1
2098 Female, age 72, unknown 61.4
2809 Male, age 90, both hemispheres 54.4
2480 Male, age 75, both hemispheres 54.0
2295 Male, age 66, both hemispheres 45.2
2068 Male, age 55, unknown 41.4
2820 Female, age 79, both hemispheres 38.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

45.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 45.8
Samples: 204

Max nTPM: 73.3
Min nTPM: 25.4
Std nTPM: 7.2
Median nTPM: 45.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 73.3
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 69.1
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 69.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 63.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 62.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 62.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 61.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 61.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 61.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 60.1
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 59.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 59.5
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 58.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 57.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 57.4
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 57.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 56.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 55.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 54.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 54.9
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 54.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 53.6
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 53.3
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 53.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 52.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 52.9
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 52.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 52.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 52.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 52.5
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 52.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 52.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 52.2
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 51.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 51.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 51.8
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 51.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 51.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 51.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 50.9
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 50.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 50.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 50.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 49.8
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 49.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 49.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 49.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 49.6
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 49.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 49.4
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 49.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 49.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 49.1
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 49.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 48.9
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 48.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 48.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 48.6
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 48.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 48.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 48.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 48.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 48.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 47.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 47.9
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 47.7
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 47.6
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 47.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 47.5
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 47.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 47.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 47.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 47.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 47.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 47.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 47.2
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 47.0
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 47.0
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 46.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 46.8
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 46.8
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 46.7
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 46.7
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 46.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 46.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 46.5
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 46.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 46.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 46.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 46.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 46.1
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 46.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 46.0
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 46.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 46.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 45.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 45.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 45.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 45.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 45.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 45.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 45.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 45.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 45.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 45.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 45.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 45.3
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 45.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 45.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 45.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 45.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 44.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 44.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 44.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 44.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 44.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 44.5
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 44.3
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 44.3
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 44.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 44.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 44.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 44.1
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 44.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 43.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 43.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 43.8
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 43.7
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 43.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 43.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 43.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 43.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 43.0
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 42.9
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 42.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 42.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 42.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 42.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 42.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 42.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 42.5
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 42.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 42.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 42.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 42.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 41.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 41.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 41.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 41.6
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 41.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 41.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 41.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 41.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 41.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 41.1
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 41.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 41.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 41.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 41.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 40.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 40.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 40.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 40.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 40.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 40.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 40.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 40.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 39.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 39.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 39.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 39.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 38.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 38.8
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 38.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 38.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 38.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 38.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 38.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 38.0
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 37.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 37.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 37.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 37.0
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 36.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 36.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 36.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 36.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 36.3
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 36.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 36.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 35.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 35.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 35.6
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 35.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 34.9
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 34.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 33.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 33.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 32.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 31.9
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 31.7
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 31.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 31.1
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 25.4
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

54.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 54.4
FF:10159-103A6 76 years, female 66.7
FF:10181-103D1 60 years, female 42.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

91.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 88.5
Samples: 4

Max nTPM: 100.2
Min nTPM: 83.1
Sample A Female 84.9
Sample B Female 83.1
Sample C Male 100.2
Sample D Male 85.7
Ventral spinal cord
nTPM: 91.8
Samples: 4

Max nTPM: 93.1
Min nTPM: 90.3
Sample A Female 92.8
Sample B Female 91.0
Sample C Male 93.1
Sample D Male 90.3

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