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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:457.2 nTPM
HPA Brain:620.0 nTPM
GTEx:457.2 nTPM
FANTOM5:725.5 Scaled Tags Per Million
Pig:259.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

620.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 531.2
1981 Female, age 72, midline 663.7
2816 Male, age 47, midline 514.9
2565 Male, age 75, midline 512.4
2194 Female, age 79, both hemispheres 511.7
2048 Male, age 55, midline 453.4
Cervical spinal cord, dorsal horn
nTPM: 589.8
2296 Male, age 66, both hemispheres 802.3
2173 Female, age 72, unknown 657.4
2069 Male, age 47, both hemispheres 573.1
2721 Male, age 90, both hemispheres 512.3
1877 Male, age 55, unknown 508.9
2297 Male, age 75, both hemispheres 484.8
Cervical spinal cord, ventral horn
nTPM: 620.0
2098 Female, age 72, unknown 851.3
2480 Male, age 75, both hemispheres 686.7
2809 Male, age 90, both hemispheres 637.8
2068 Male, age 55, unknown 562.6
2295 Male, age 66, both hemispheres 547.0
2820 Female, age 79, both hemispheres 434.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

457.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 457.2
Samples: 204

Max nTPM: 867.8
Min nTPM: 128.1
Std nTPM: 151.1
Median nTPM: 450.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 867.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 855.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 854.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 824.8
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 809.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 787.5
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 784.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 782.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 756.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 753.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 747.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 742.8
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 731.9
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 728.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 720.1
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 719.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 716.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 693.7
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 693.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 683.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 681.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 659.0
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 657.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 656.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 646.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 636.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 628.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 620.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 617.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 616.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 614.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 609.4
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 607.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 604.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 595.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 591.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 589.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 578.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 567.5
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 566.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 565.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 552.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 549.0
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 547.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 547.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 543.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 541.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 537.5
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 535.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 535.0
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 531.7
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 528.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 526.7
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 526.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 523.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 521.7
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 520.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 520.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 518.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 518.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 517.7
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 516.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 515.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 515.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 513.0
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 510.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 509.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 509.7
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 505.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 503.4
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 499.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 498.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 497.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 495.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 493.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 491.0
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 490.1
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 489.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 484.9
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 484.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 484.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 481.2
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 480.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 477.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 474.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 474.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 471.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 470.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 467.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 465.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 463.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 463.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 459.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 459.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 457.5
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 457.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 454.8
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 453.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 453.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 452.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 452.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 450.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 450.2
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 449.7
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 449.2
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 448.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 446.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 445.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 440.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 436.0
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 435.3
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 435.0
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 434.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 434.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 433.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 430.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 430.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 429.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 429.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 427.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 427.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 426.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 423.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 423.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 421.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 417.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 412.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 412.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 409.7
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 406.1
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 404.5
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 404.2
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 397.1
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 390.4
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 386.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 385.9
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 385.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 385.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 383.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 381.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 379.9
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 377.3
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 376.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 374.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 371.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 367.3
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 364.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 363.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 363.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 359.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 347.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 345.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 345.4
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 344.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 342.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 342.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 340.4
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 336.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 335.8
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 335.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 330.0
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 326.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 326.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 322.8
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 320.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 318.7
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 318.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 317.3
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 308.0
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 307.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 305.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 304.2
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 299.8
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 296.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 295.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 293.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 291.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 290.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 289.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 287.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 281.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 277.9
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 277.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 274.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 273.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 267.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 267.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 263.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 256.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 248.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 248.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 237.4
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 236.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 219.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 217.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 217.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 216.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 201.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 194.6
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 184.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 178.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 170.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 138.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 128.1
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

725.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 725.5
FF:10181-103D1 60 years, female 970.1
FF:10159-103A6 76 years, female 480.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

259.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 259.4
Samples: 4

Max nTPM: 333.2
Min nTPM: 194.6
Sample A Female 194.6
Sample B Female 246.3
Sample C Male 333.2
Sample D Male 263.3
Ventral spinal cord
nTPM: 246.2
Samples: 4

Max nTPM: 279.7
Min nTPM: 205.0
Sample A Female 230.3
Sample B Female 205.0
Sample C Male 269.9
Sample D Male 279.7

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