MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.2 nTPM
HPA Brain:71.5 nTPM
GTEx:23.2 nTPM
FANTOM5:113.4 Scaled Tags Per Million
Pig:62.8 nTPM
Mouse:34.3 nTPM
Allen mouse:0.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 71.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 63.2
1870 Female, age 42, unknown 72.8
2411 Female, age 72, unknown 70.8
2019 Male, age 18, unknown 70.3
1833 Male, age 53, unknown 67.0
1830 Male, age 51, unknown 66.2
2828 Female, age 72, unknown 63.5
1827 Male, age 72, unknown 59.7
2586 Male, age 75, left hemisphere 57.1
2666 Male, age 74, left hemisphere 53.4
2219 Male, age 76, both hemispheres 51.2
Dorsal raphe nucleus
nTPM: 61.4
2750 Male, age 76, both hemispheres 64.7
2298 Female, age 72, unknown 62.6
2016 Female, age 72, unknown 62.2
1828 Male, age 53, unknown 61.7
2047 Male, age 72, unknown 55.8
Inferior colliculus
nTPM: 57.8
1848 Female, age 42, unknown 60.0
2097 Female, age 72, unknown 59.3
2849 Male, age 72, unknown 56.1
1890 Male, age 53, unknown 55.7
Median raphe nucleus
nTPM: 64.3
2220 Male, age 76, midline 64.3
Periaquaductal grey, anterior
nTPM: 60.3
2502 Female, age 75, unknown 64.7
1947 Male, age 18, unknown 62.7
1795 Male, age 51, unknown 53.4
Periaquaductal grey, dorsal
nTPM: 58.8
2850 Male, age 76, both hemispheres 68.3
1831 Male, age 72, unknown 58.1
2464 Female, age 72, unknown 57.7
1840 Male, age 53, unknown 50.9
Periaquaductal grey, lateral
nTPM: 59.1
2140 Male, age 76, both hemispheres 65.6
2053 Male, age 18, unknown 57.9
2272 Male, age 74, both hemispheres 53.9
Pretectal area
nTPM: 61.4
2667 Female, age 75, unknown 65.9
2316 Male, age 76, right hemisphere 63.5
2273 Male, age 74, both hemispheres 63.4
1815 Male, age 53, unknown 63.3
2007 Male, age 72, unknown 62.5
1816 Male, age 51, unknown 61.7
1817 Female, age 42, unknown 61.6
2407 Male, age 75, both hemispheres 61.6
2224 Female, age 72, unknown 60.5
1944 Female, age 72, unknown 56.4
2825 Male, age 18, unknown 55.5
Red nucleus
nTPM: 71.5
1954 Female, age 42, unknown 79.8
1904 Male, age 53, unknown 78.5
1865 Male, age 51, unknown 78.4
1821 Female, age 72, unknown 77.5
2503 Female, age 72, unknown 76.9
2227 Male, age 72, unknown 73.5
2823 Male, age 76, right hemisphere 72.7
2725 Female, age 75, unknown 69.7
2785 Male, age 18, unknown 69.0
2769 Male, age 72, unknown 68.8
2588 Male, age 74, left hemisphere 58.0
2584 Male, age 75, left hemisphere 54.8
Substantia nigra
nTPM: 58.7
2409 Female, age 72, unknown 63.6
2699 Male, age 18, unknown 62.1
1851 Male, age 51, unknown 61.1
1941 Male, age 53, unknown 59.9
1916 Female, age 42, unknown 59.6
2241 Male, age 72, unknown 59.6
1889 Female, age 72, unknown 59.3
2583 Male, age 75, right hemisphere 55.6
2665 Male, age 74, both hemispheres 53.4
2590 Female, age 75, unknown 53.1
Superior colliculus
nTPM: 61.0
1913 Female, age 42, unknown 72.1
1995 Male, age 72, unknown 70.0
1895 Male, age 76, right hemisphere 63.6
2587 Male, age 74, left hemisphere 61.2
2668 Female, age 75, unknown 59.1
1839 Male, age 51, unknown 58.7
1796 Male, age 53, unknown 57.6
2261 Male, age 18, unknown 56.9
2087 Female, age 72, unknown 56.0
2664 Male, age 75, both hemispheres 55.0
Ventral tegmental area
nTPM: 60.1
2223 Female, age 72, unknown 65.1
2218 Male, age 76, both hemispheres 60.6
2021 Male, age 53, unknown 60.3
2410 Female, age 72, unknown 59.8
1915 Female, age 42, unknown 57.6
1942 Male, age 51, unknown 57.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 23.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.2
Samples: 183

Max nTPM: 50.0
Min nTPM: 4.7
Std nTPM: 8.0
Median nTPM: 22.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 50.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 45.1
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 42.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 42.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 42.0
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 41.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 40.4
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 40.2
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 37.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 37.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 36.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 113.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 113.4
FF:10158-103A5 76 years, female 113.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 62.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 58.0
Samples: 4

Max nTPM: 66.0
Min nTPM: 52.8
Sample A Female 66.0
Sample B Female 56.3
Sample C Male 52.8
Sample D Male 56.7
Midbrain
nTPM: 62.8
Samples: 4

Max nTPM: 97.8
Min nTPM: 43.2
Sample A Female 97.8
Sample B Female 58.9
Sample C Male 51.4
Sample D Male 43.2
Periaqueductal gray
nTPM: 53.1
Samples: 3

Max nTPM: 55.0
Min nTPM: 49.8
Sample B Female 54.6
Sample C Male 55.0
Sample D Male 49.8
Superior colliculi
nTPM: 59.5
Samples: 4

Max nTPM: 66.4
Min nTPM: 54.0
Sample A Female 66.4
Sample B Female 58.5
Sample C Male 59.2
Sample D Male 54.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 34.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 34.4
Samples: 4

Max nTPM: 36.1
Min nTPM: 31.2
Sample A Male 31.2
Sample B Male 35.1
Sample C Female 36.1
Sample D Female 35.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
641544 Antisense, RP_040914_01_G04, Mouse strain C57BL/6J (56 days, male) 0.4

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