MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:181.0 nTPM
HPA Brain:148.4 nTPM
GTEx:181.0 nTPM
FANTOM5:6.5 Scaled Tags Per Million
Pig:262.1 nTPM
Mouse:380.6 nTPM
Allen mouse:10.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 148.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 101.3
2666 Male, age 74, left hemisphere 160.9
2219 Male, age 76, both hemispheres 127.9
2411 Female, age 72, unknown 115.8
1827 Male, age 72, unknown 111.1
2019 Male, age 18, unknown 107.9
1870 Female, age 42, unknown 81.3
1833 Male, age 53, unknown 78.4
2828 Female, age 72, unknown 78.2
2586 Male, age 75, left hemisphere 77.6
1830 Male, age 51, unknown 74.1
Dorsal raphe nucleus
nTPM: 97.5
2298 Female, age 72, unknown 139.7
2750 Male, age 76, both hemispheres 111.1
2047 Male, age 72, unknown 104.7
1828 Male, age 53, unknown 79.1
2016 Female, age 72, unknown 53.0
Inferior colliculus
nTPM: 104.4
2097 Female, age 72, unknown 149.5
1848 Female, age 42, unknown 92.7
1890 Male, age 53, unknown 90.5
2849 Male, age 72, unknown 84.9
Median raphe nucleus
nTPM: 148.4
2220 Male, age 76, midline 148.4
Periaquaductal grey, anterior
nTPM: 105.1
1795 Male, age 51, unknown 111.8
1947 Male, age 18, unknown 104.1
2502 Female, age 75, unknown 99.2
Periaquaductal grey, dorsal
nTPM: 86.3
1840 Male, age 53, unknown 95.6
2850 Male, age 76, both hemispheres 88.3
1831 Male, age 72, unknown 81.3
2464 Female, age 72, unknown 80.0
Periaquaductal grey, lateral
nTPM: 72.8
2053 Male, age 18, unknown 77.2
2272 Male, age 74, both hemispheres 72.8
2140 Male, age 76, both hemispheres 68.5
Pretectal area
nTPM: 120.1
1944 Female, age 72, unknown 185.8
1817 Female, age 42, unknown 174.7
1816 Male, age 51, unknown 170.2
2007 Male, age 72, unknown 158.9
1815 Male, age 53, unknown 140.7
2667 Female, age 75, unknown 106.5
2224 Female, age 72, unknown 102.9
2825 Male, age 18, unknown 79.5
2407 Male, age 75, both hemispheres 70.4
2273 Male, age 74, both hemispheres 67.8
2316 Male, age 76, right hemisphere 63.4
Red nucleus
nTPM: 68.8
2785 Male, age 18, unknown 102.9
1821 Female, age 72, unknown 97.5
1954 Female, age 42, unknown 78.8
2584 Male, age 75, left hemisphere 78.1
2769 Male, age 72, unknown 65.9
2227 Male, age 72, unknown 65.4
1904 Male, age 53, unknown 64.8
2823 Male, age 76, right hemisphere 64.8
1865 Male, age 51, unknown 61.1
2503 Female, age 72, unknown 53.9
2725 Female, age 75, unknown 49.8
2588 Male, age 74, left hemisphere 42.1
Substantia nigra
nTPM: 127.0
1941 Male, age 53, unknown 196.1
1916 Female, age 42, unknown 190.8
1889 Female, age 72, unknown 177.2
1851 Male, age 51, unknown 149.1
2241 Male, age 72, unknown 135.0
2665 Male, age 74, both hemispheres 109.9
2409 Female, age 72, unknown 108.2
2699 Male, age 18, unknown 86.2
2583 Male, age 75, right hemisphere 61.7
2590 Female, age 75, unknown 55.9
Superior colliculus
nTPM: 116.9
2668 Female, age 75, unknown 319.0
2087 Female, age 72, unknown 145.2
2261 Male, age 18, unknown 110.6
1796 Male, age 53, unknown 109.8
1895 Male, age 76, right hemisphere 106.5
1913 Female, age 42, unknown 86.2
1839 Male, age 51, unknown 84.9
2587 Male, age 74, left hemisphere 73.8
2664 Male, age 75, both hemispheres 69.3
1995 Male, age 72, unknown 64.2
Ventral tegmental area
nTPM: 117.2
2410 Female, age 72, unknown 159.3
2218 Male, age 76, both hemispheres 151.9
1915 Female, age 42, unknown 125.4
1942 Male, age 51, unknown 96.0
2223 Female, age 72, unknown 93.5
2021 Male, age 53, unknown 76.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 181.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 181.0
Samples: 183

Max nTPM: 954.9
Min nTPM: 11.2
Std nTPM: 155.6
Median nTPM: 136.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 954.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 794.2
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 607.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 591.0
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 568.7
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 539.5
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 526.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 524.9
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 473.8
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 469.8
GTEX-111FC-0011-R2a-SM-GIN8S 60-69 years, male 460.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 6.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 6.5
FF:10158-103A5 76 years, female 6.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 262.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 192.4
Samples: 4

Max nTPM: 316.7
Min nTPM: 40.7
Sample A Female 316.7
Sample B Female 129.7
Sample C Male 282.6
Sample D Male 40.7
Midbrain
nTPM: 202.4
Samples: 4

Max nTPM: 325.2
Min nTPM: 60.5
Sample A Female 60.5
Sample B Female 161.3
Sample C Male 325.2
Sample D Male 262.6
Periaqueductal gray
nTPM: 159.2
Samples: 3

Max nTPM: 207.8
Min nTPM: 125.5
Sample B Female 125.5
Sample C Male 207.8
Sample D Male 144.4
Superior colliculi
nTPM: 262.1
Samples: 4

Max nTPM: 353.8
Min nTPM: 180.0
Sample A Female 260.9
Sample B Female 180.0
Sample C Male 353.8
Sample D Male 253.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 380.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 380.7
Samples: 4

Max nTPM: 388.4
Min nTPM: 373.0
Sample A Male 377.5
Sample B Male 388.4
Sample C Female 373.0
Sample D Female 383.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 10.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.1
75988633 Antisense, RP_060620_02_E05, Mouse strain C57BL/6J (56 days, male) 10.7
71280733 Antisense, RP_050818_01_E04, Mouse strain C57BL/6J (56 days, male) 9.5

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